{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":294978583,"defaultBranch":"master","name":"pggb","ownerLogin":"pangenome","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-09-12T16:07:58.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/60657583?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1726257586.0","currentOid":""},"activityList":{"items":[{"before":"66eedaa1ec002498b8bd8032e34850f48fb183ca","after":"3c21d20a73dfba6539abe3ed3ce1edd784ebc2d1","ref":"refs/heads/master","pushedAt":"2024-09-16T22:04:05.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Merge pull request #411 from pangenome/update_stuff\n\nupdate vg","shortMessageHtmlLink":"Merge pull request #411 from pangenome/update_stuff"}},{"before":"66eedaa1ec002498b8bd8032e34850f48fb183ca","after":"40b7b8912c1fecf76afc164a01200f828b204dce","ref":"refs/heads/update_stuff","pushedAt":"2024-09-16T22:03:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"update vg","shortMessageHtmlLink":"update vg"}},{"before":"8550bcbd68b0d78c0c09612dfc313c71f2cde2c8","after":"66eedaa1ec002498b8bd8032e34850f48fb183ca","ref":"refs/heads/update_stuff","pushedAt":"2024-09-16T21:06:05.000Z","pushType":"push","commitsCount":31,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Merge pull request #410 from pangenome/fallback_version\n\nadd a fall back version","shortMessageHtmlLink":"Merge pull request #410 from pangenome/fallback_version"}},{"before":"dcf87b43b498c67fca3454854a02392b875c188f","after":"66eedaa1ec002498b8bd8032e34850f48fb183ca","ref":"refs/heads/master","pushedAt":"2024-09-13T20:00:26.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Merge pull request #410 from pangenome/fallback_version\n\nadd a fall back version","shortMessageHtmlLink":"Merge pull request #410 from pangenome/fallback_version"}},{"before":null,"after":"468ced19617c43a41715025c93b7195c0cbc947f","ref":"refs/heads/fallback_version","pushedAt":"2024-09-13T19:59:46.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"add a fall back version","shortMessageHtmlLink":"add a fall back version"}},{"before":"09837a49bfbb23218b0cad6dab0e878b6bf14a3a","after":"dcf87b43b498c67fca3454854a02392b875c188f","ref":"refs/heads/master","pushedAt":"2024-09-13T19:57:04.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Merge pull request #408 from ASLeonard/log-pggb-version\n\nAdd pggb version to its own log","shortMessageHtmlLink":"Merge pull request #408 from ASLeonard/log-pggb-version"}},{"before":"9c2a8b8950a87b09c9593968eedb49a45b66c75f","after":"09837a49bfbb23218b0cad6dab0e878b6bf14a3a","ref":"refs/heads/master","pushedAt":"2024-09-13T19:56:40.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Merge pull request #409 from nsmlzl/pr_update_link\n\nupdated link example pangenomes","shortMessageHtmlLink":"Merge pull request #409 from nsmlzl/pr_update_link"}},{"before":"c09b84867a7fd97868d970de754dca89cdc8f80b","after":"9c2a8b8950a87b09c9593968eedb49a45b66c75f","ref":"refs/heads/master","pushedAt":"2024-08-22T07:10:57.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Merge pull request #405 from pangenome/strict_pansn_check\n\nPanSN requires a number as haplotype_id","shortMessageHtmlLink":"Merge pull request #405 from pangenome/strict_pansn_check"}},{"before":"bbcc2b41da9ae4c5224f88a0f3ba7b929d325e0f","after":"f6908ebd87c877611bc58c4e0aeb9f138843a0dc","ref":"refs/heads/strict_pansn_check","pushedAt":"2024-08-22T07:10:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"formatting","shortMessageHtmlLink":"formatting"}},{"before":"396f5bbd63e29f995dad0c58631ce7d4ef22bd0c","after":"bbcc2b41da9ae4c5224f88a0f3ba7b929d325e0f","ref":"refs/heads/strict_pansn_check","pushedAt":"2024-08-22T07:09:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"typo","shortMessageHtmlLink":"typo"}},{"before":null,"after":"396f5bbd63e29f995dad0c58631ce7d4ef22bd0c","ref":"refs/heads/strict_pansn_check","pushedAt":"2024-08-22T07:06:38.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"PanSN requres a number for the haplotype_id","shortMessageHtmlLink":"PanSN requres a number for the haplotype_id"}},{"before":"0d849d6cdab83220f165f03039287dc710e6e95f","after":"c09b84867a7fd97868d970de754dca89cdc8f80b","ref":"refs/heads/master","pushedAt":"2024-07-12T15:58:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"3432d1ab26997834c44156d02b17e3fc734661d7","after":"0d849d6cdab83220f165f03039287dc710e6e95f","ref":"refs/heads/master","pushedAt":"2024-07-12T15:57:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"a15e3503adcdeb0dc5e80fc086e7368ef33cb8b9","after":"3432d1ab26997834c44156d02b17e3fc734661d7","ref":"refs/heads/master","pushedAt":"2024-07-07T14:03:44.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Merge pull request #402 from pangenome/wfmash-local-inv\n\nwfmash v0.16.0","shortMessageHtmlLink":"Merge pull request #402 from pangenome/wfmash-local-inv"}},{"before":"09114b388f49cb601cdd9c79f8f18589d47266dd","after":"3961c02e445428fce5391adb5287923266744133","ref":"refs/heads/wfmash-local-inv","pushedAt":"2024-07-07T13:43:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"test","shortMessageHtmlLink":"test"}},{"before":"34ce440e9fc5ed6b5a70dadecbb67836c48ca869","after":"09114b388f49cb601cdd9c79f8f18589d47266dd","ref":"refs/heads/wfmash-local-inv","pushedAt":"2024-07-03T09:17:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"oops","shortMessageHtmlLink":"oops"}},{"before":"8951c0af7e29a5ae437e6c6108b3da7c9fc3cfaa","after":"34ce440e9fc5ed6b5a70dadecbb67836c48ca869","ref":"refs/heads/wfmash-local-inv","pushedAt":"2024-07-02T14:52:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"lto buggy in gcc-10 used in docker","shortMessageHtmlLink":"lto buggy in gcc-10 used in docker"}},{"before":"0ff5fdbfa3ac3cd7aafc2287abd416ceb28ac94b","after":"8951c0af7e29a5ae437e6c6108b3da7c9fc3cfaa","ref":"refs/heads/wfmash-local-inv","pushedAt":"2024-07-02T10:11:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"fix wfmash build","shortMessageHtmlLink":"fix wfmash build"}},{"before":null,"after":"0ff5fdbfa3ac3cd7aafc2287abd416ceb28ac94b","ref":"refs/heads/wfmash-local-inv","pushedAt":"2024-07-02T09:50:57.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"wfmash v0.16.0","shortMessageHtmlLink":"wfmash v0.16.0"}},{"before":"87510bcb2498531155b5c389219704ff554be400","after":"a15e3503adcdeb0dc5e80fc086e7368ef33cb8b9","ref":"refs/heads/master","pushedAt":"2024-06-22T08:24:11.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Merge pull request #401 from pangenome/update_vcfbub_vg\n\nupdate vcfbub and vg, and a few other tools","shortMessageHtmlLink":"Merge pull request #401 from pangenome/update_vcfbub_vg"}},{"before":null,"after":"3731c3d99e149066d2c1773fbc4307acb3d292f6","ref":"refs/heads/update_vcfbub_vg","pushedAt":"2024-06-22T07:50:59.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"update vcfbub and vg, and a few other tools","shortMessageHtmlLink":"update vcfbub and vg, and a few other tools"}},{"before":"02227ae476fb317cec971de96b2dd6a7f827424c","after":"87510bcb2498531155b5c389219704ff554be400","ref":"refs/heads/master","pushedAt":"2024-05-05T01:08:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"manage floating values","shortMessageHtmlLink":"manage floating values"}},{"before":"a8cb62dd53f0837dba669c68ab41a9dcd0e6b0ff","after":"02227ae476fb317cec971de96b2dd6a7f827424c","ref":"refs/heads/master","pushedAt":"2024-05-05T00:21:32.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Merge pull request #397 from pangenome/fix_hg_filter_ani_diff\n\nBe smoother with the ANI filter in the mapping step","shortMessageHtmlLink":"Merge pull request #397 from pangenome/fix_hg_filter_ani_diff"}},{"before":null,"after":"1b2e5f9a1925844d00ff8b849fa2882b54b06fdd","ref":"refs/heads/fix_hg_filter_ani_diff","pushedAt":"2024-05-05T00:19:26.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"avoid the hg filter ani diff with high divergence; remove old parameter from YML","shortMessageHtmlLink":"avoid the hg filter ani diff with high divergence; remove old paramet…"}},{"before":"832de9077059d0f53c62414b2942f7b415a52742","after":"a8cb62dd53f0837dba669c68ab41a9dcd0e6b0ff","ref":"refs/heads/master","pushedAt":"2024-05-05T00:07:28.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Merge pull request #396 from pangenome/data_table\n\nfix workflow by updating data table","shortMessageHtmlLink":"Merge pull request #396 from pangenome/data_table"}},{"before":"672fda8ce7d4b1aea0ee9fd086121bd20d1f109c","after":"516ef89d22256db46c7c88d594cabdb446782704","ref":"refs/heads/data_table","pushedAt":"2024-05-04T23:40:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"typo","shortMessageHtmlLink":"typo"}},{"before":null,"after":"672fda8ce7d4b1aea0ee9fd086121bd20d1f109c","ref":"refs/heads/data_table","pushedAt":"2024-05-04T23:25:12.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"update data table","shortMessageHtmlLink":"update data table"}},{"before":"2c91de06d928a8babbee63cbfaa86a5e25743c1f","after":"832de9077059d0f53c62414b2942f7b415a52742","ref":"refs/heads/master","pushedAt":"2024-05-04T23:06:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"update wfmash","shortMessageHtmlLink":"update wfmash"}},{"before":"166944db0f07bc289e7d91496e0957e129f4511b","after":"2c91de06d928a8babbee63cbfaa86a5e25743c1f","ref":"refs/heads/master","pushedAt":"2024-05-01T17:53:31.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Merge pull request #395 from pangenome/more_doc\n\n Resolving the `'Illegal option --'` error","shortMessageHtmlLink":"Merge pull request #395 from pangenome/more_doc"}},{"before":null,"after":"f27c7d39599be9d90e54e0d64a1e412580555d11","ref":"refs/heads/more_doc","pushedAt":"2024-05-01T17:52:09.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":" Resolving the `'Illegal option --'` error","shortMessageHtmlLink":" Resolving the 'Illegal option --' error"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xNlQyMjowNDowNS4wMDAwMDBazwAAAAS36qca","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNS0wMVQxNzo1MjowOS4wMDAwMDBazwAAAAQ_GEmE"}},"title":"Activity · pangenome/pggb"}