Repositories list

• deepsea-experiments

  Public
  Jupyter Notebook

  •

  MIT License

  •1•1•0•2•Updated Jul 25, 2024Jul 25, 2024

• gpf-impala-udafs

  Public
  C++

  •0•0•0•0•Updated Jul 1, 2022Jul 1, 2022

• RangeHTTPServer

  Public
  SimpleHTTPServer with support for Range requests

  Python

  •

  Apache License 2.0

  •30•0•0•0•Updated Aug 20, 2021Aug 20, 2021

• SCclust

  Public
  Segmentation and Clustering of Single Cell Sequencing Copy Number Profiles

  R

  •

  MIT License

  •1•0•0•0•Updated Apr 28, 2021Apr 28, 2021

• gpf_packaging

  Public
  Shell

  •0•0•0•0•Updated Apr 28, 2021Apr 28, 2021

• syntfbs

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 6, 2021Apr 6, 2021

• seqpipe-impala

  Public
  Shell

  •0•0•0•0•Updated Oct 23, 2020Oct 23, 2020

• seqpipe-docker-impala

  Public
  Scripts to build a Docker image with Hadoop running in psedo-distributed mode

  Shell

  •

  Apache License 2.0

  •13•2•0•0•Updated Oct 22, 2020Oct 22, 2020

• cyvcf2

  Public
  cython + htslib == fast VCF and BCF processing

  Python

  •

  MIT License

  •72•0•0•0•Updated Mar 20, 2020Mar 20, 2020

• seqpipe.github.io

  Public
  HTML

  •0•0•0•0•Updated Sep 21, 2019Sep 21, 2019

• seqpipe-anaconda-base

  Public
  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Aug 30, 2019Aug 30, 2019

• sgains

  Public
  Sparse Genomic Analysis of Individual Nuclei by Sequencing

  Python

  •

  MIT License

  •1•0•0•0•Updated Jun 5, 2019Jun 5, 2019

• SCGV

  Public
  SCGV is an interacive graphical tool for single-cell genomics data, with emphasis on single-cell genomics of cancer

  Python

  •

  MIT License

  •2•0•0•0•Updated Apr 23, 2019Apr 23, 2019