From 2ef1ff5774e44306f31034512ee5db972dfbd4c7 Mon Sep 17 00:00:00 2001 From: David Mobley Date: Wed, 13 Feb 2019 15:00:15 -0800 Subject: [PATCH 1/3] Fix human error in order of sigma/epsilon for polar hydrogens. --- openforcefield/data/forcefield/smirnoff99Frosst.offxml | 2 +- utilities/convert_frosst/smirnoff99Frosst.offxml | 2 +- utilities/convert_frosst/smirnoffishFrcmod.parm99Frosst.txt | 2 +- utilities/convert_frosst/template.offxml | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/openforcefield/data/forcefield/smirnoff99Frosst.offxml b/openforcefield/data/forcefield/smirnoff99Frosst.offxml index d35ceb0c3..4e3f96e72 100755 --- a/openforcefield/data/forcefield/smirnoff99Frosst.offxml +++ b/openforcefield/data/forcefield/smirnoff99Frosst.offxml @@ -312,7 +312,7 @@ - + diff --git a/utilities/convert_frosst/smirnoff99Frosst.offxml b/utilities/convert_frosst/smirnoff99Frosst.offxml index d35ceb0c3..4e3f96e72 100755 --- a/utilities/convert_frosst/smirnoff99Frosst.offxml +++ b/utilities/convert_frosst/smirnoff99Frosst.offxml @@ -312,7 +312,7 @@ - + diff --git a/utilities/convert_frosst/smirnoffishFrcmod.parm99Frosst.txt b/utilities/convert_frosst/smirnoffishFrcmod.parm99Frosst.txt index 93af20b38..ab4c9f8e9 100755 --- a/utilities/convert_frosst/smirnoffishFrcmod.parm99Frosst.txt +++ b/utilities/convert_frosst/smirnoffishFrcmod.parm99Frosst.txt @@ -32,7 +32,7 @@ NONBON [#1:1]-[#6X3](~[#7,#8,#9,#16,#17,#35])~[#7,#8,#9,#16,#17,#35] 1.3590 0.0150 parm99 H5 Spellmeyer, two electrowithdr. neighbor [#1:1]-[#6X2] 1.4590 0.0150 parm99 HZ H bonded to sp C (Howard et al JCC 16) [#1:1]-[#7] 0.6000 0.0157 parm99 H -[#1:1]-[#8] 5.27e-05 0.3000 SMIRNOFF HO Mobley et al. 2018 +[#1:1]-[#8] 0.3000 5.27e-05 SMIRNOFF HO Mobley et al. 2018 [#1:1]-[#16] 0.6000 0.0157 parm99 HS # carbon [#6:1] 1.9080 0.0860 parm99 generic Spellmeyer diff --git a/utilities/convert_frosst/template.offxml b/utilities/convert_frosst/template.offxml index 12d43e3a8..7016e626c 100755 --- a/utilities/convert_frosst/template.offxml +++ b/utilities/convert_frosst/template.offxml @@ -3,7 +3,7 @@ -Date: Feb. 27, 2018 +Date: Dec. 12, 2018 C. I. Bayly, OpenEye/UC Irvine; C. C. Bannan, UC Irvine; D. L. Mobley, UC Irvine From 893bbb5fe20e7c02166a27f97573be9909da9118 Mon Sep 17 00:00:00 2001 From: bannanc Date: Thu, 14 Feb 2019 12:16:54 -0500 Subject: [PATCH 2/3] add date to new smirnoff changes --- .../convert_frosst/smirnoff99Frosst.offxml | 126 +++++++++--------- .../smirnoffishFrcmod.parm99Frosst.txt | 3 +- 2 files changed, 65 insertions(+), 64 deletions(-) diff --git a/utilities/convert_frosst/smirnoff99Frosst.offxml b/utilities/convert_frosst/smirnoff99Frosst.offxml index 4e3f96e72..2c44c46d6 100755 --- a/utilities/convert_frosst/smirnoff99Frosst.offxml +++ b/utilities/convert_frosst/smirnoff99Frosst.offxml @@ -1,7 +1,7 @@ - Date: Dec. 12, 2018 + Date: Feb. 14, 2019 C. I. Bayly, OpenEye/UC Irvine; C. C. Bannan, UC Irvine; D. L. Mobley, UC Irvine @@ -141,75 +141,75 @@ - + - - - - - - - - + + + + + + + + - + - - + + - - - - - - + + + + + + - - - - + + + + - - - - + + + + - - - + + + - + - + - + - + - - - - + + + + - + @@ -224,23 +224,23 @@ - + - - - - + + + + - - - + + + - - + + @@ -261,9 +261,9 @@ - - - + + + @@ -276,24 +276,24 @@ - - - - - - + + + + + + - - + + - + - + - + diff --git a/utilities/convert_frosst/smirnoffishFrcmod.parm99Frosst.txt b/utilities/convert_frosst/smirnoffishFrcmod.parm99Frosst.txt index ab4c9f8e9..674b39401 100755 --- a/utilities/convert_frosst/smirnoffishFrcmod.parm99Frosst.txt +++ b/utilities/convert_frosst/smirnoffishFrcmod.parm99Frosst.txt @@ -13,7 +13,8 @@ DATE # Date: Nov. 28, 2017 # Date: Feb. 27, 2018 # Date: Nov. 7, 2018 -Date: Dec. 12, 2018 +# Date: Dec. 12, 2018 +Date: Feb. 14, 2019 # Author: please make sure all authors are on one line, only last line will be used AUTHOR From 70329f927ee3f5bdcad5bf36d4f88baa8a3e5c45 Mon Sep 17 00:00:00 2001 From: bannanc Date: Thu, 14 Feb 2019 12:17:25 -0500 Subject: [PATCH 3/3] copy smirnoff to data folder --- .../data/forcefield/smirnoff99Frosst.offxml | 126 +++++++++--------- 1 file changed, 63 insertions(+), 63 deletions(-) diff --git a/openforcefield/data/forcefield/smirnoff99Frosst.offxml b/openforcefield/data/forcefield/smirnoff99Frosst.offxml index 4e3f96e72..2c44c46d6 100755 --- a/openforcefield/data/forcefield/smirnoff99Frosst.offxml +++ b/openforcefield/data/forcefield/smirnoff99Frosst.offxml @@ -1,7 +1,7 @@ - Date: Dec. 12, 2018 + Date: Feb. 14, 2019 C. I. Bayly, OpenEye/UC Irvine; C. C. Bannan, UC Irvine; D. L. Mobley, UC Irvine @@ -141,75 +141,75 @@ - + - - - - - - - - + + + + + + + + - + - - + + - - - - - - + + + + + + - - - - + + + + - - - - + + + + - - - + + + - + - + - + - + - - - - + + + + - + @@ -224,23 +224,23 @@ - + - - - - + + + + - - - + + + - - + + @@ -261,9 +261,9 @@ - - - + + + @@ -276,24 +276,24 @@ - - - - - - + + + + + + - - + + - + - + - +