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DESCRIPTION
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DESCRIPTION
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Package: bandle
Type: Package
Title: An R package for the Bayesian analysis of differential subcellular
localisation experiments
Version: 1.1.3
Authors@R: c(person(family = "Crook", given = "Oliver M.",
email = "[email protected]",
comment = c(ORCID = "0000-0001-5669-8506"),
role = c("aut", "cre")),
person(family = "Breckels", given = "Lisa",
email = "[email protected]",
comment = c(ORCID = "0000-0001-8918-7171"),
role = c("aut")))
Description: The Bandle package enables the analysis and visualisation of
differential localisation experiments using mass-spectrometry data.
Experimental methods supported include dynamic LOPIT-DC, hyperLOPIT,
Dynamic Organellar Maps, Dynamic PCP. It provides Bioconductor infrastructure
to analyse these data.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.1), S4Vectors, Biobase, MSnbase, pRoloc
Imports: Rcpp (>= 1.0.4.6),
pRolocdata,
lbfgs,
ggplot2,
dplyr,
plyr,
knitr,
methods,
BiocParallel,
robustbase,
BiocStyle,
ggalluvial,
ggrepel,
tidyr,
circlize,
graphics,
stats,
utils,
grDevices,
rlang
Suggests:
coda (>= 0.19-4),
testthat,
interp,
fields,
pheatmap,
viridis,
rmarkdown,
spelling
VignetteBuilder: knitr
LinkingTo: Rcpp, RcppArmadillo, BH
Roxygen: list(markdown=TRUE)
RoxygenNote: 7.2.0
biocViews: Bayesian, Classification, Clustering, ImmunoOncology,
QualityControl,DataImport, Proteomics, MassSpectrometry
BugReports: https://github.com/ococrook/bandle/issues
URL: http://github.com/ococrook/bandle
Language: en-US