From 41de505ec8ff3637ab3cb06a41ccbc29683f566c Mon Sep 17 00:00:00 2001 From: Kate Date: Mon, 14 Aug 2023 19:07:08 +0100 Subject: [PATCH] Remove all R scripts that require to disable the sandbox --- packages/odnnr/odnnr.2.0.0/opam | 4 +--- packages/oplsr/oplsr.8.0.1/opam | 3 +-- packages/orrandomForest/orrandomForest.1.0.0/opam | 5 +---- packages/orrandomForest/orrandomForest.2.0.1/opam | 7 +------ packages/orrandomForest/orrandomForest.3.0.0/opam | 7 +------ packages/orsvm_e1071/orsvm_e1071.2.0.0/opam | 3 --- packages/orsvm_e1071/orsvm_e1071.3.0.0/opam | 5 +---- packages/orsvm_e1071/orsvm_e1071.3.0.1/opam | 2 +- packages/orsvm_e1071/orsvm_e1071.3.0.2/opam | 2 +- packages/orsvm_e1071/orsvm_e1071.4.0.0/opam | 2 +- packages/orxgboost/orxgboost.1.0.1/opam | 5 +---- packages/orxgboost/orxgboost.1.1.0/opam | 5 +---- packages/orxgboost/orxgboost.1.2.0/opam | 5 +---- 13 files changed, 12 insertions(+), 43 deletions(-) diff --git a/packages/odnnr/odnnr.2.0.0/opam b/packages/odnnr/odnnr.2.0.0/opam index 4b2f60f222e..2583564b6d0 100644 --- a/packages/odnnr/odnnr.2.0.0/opam +++ b/packages/odnnr/odnnr.2.0.0/opam @@ -5,7 +5,6 @@ homepage: "https://github.com/UnixJunkie/odnnr" bug-reports: "https://github.com/UnixJunkie/odnnr/issues" dev-repo: "git+https://github.com/UnixJunkie/odnnr.git" license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception" -install: ["R" "CMD" "BATCH" "install_keras.r"] build: ["dune" "build" "-p" name "-j" jobs] depends: [ "ocaml" @@ -18,7 +17,6 @@ depends: [ "cpm" "conf-gnuplot" ] -x-ci-accept-failures: ["debian-unstable"] synopsis: "Regressor using a Deep Neural Network" description: """ Some OCaml functions to drive the Deep Learning R 'keras' package; @@ -36,7 +34,7 @@ Please interact with R to install required dependencies in user-space: R install.packages('keras', repos='http://cran.r-project.org') library(keras) -install_keras(method = 'conda', tensorflow = 'cpu')""" {failure} +install_keras(method = 'conda', tensorflow = 'cpu')""" url { src: "https://github.com/UnixJunkie/odnnr/archive/v2.0.0.tar.gz" checksum: [ diff --git a/packages/oplsr/oplsr.8.0.1/opam b/packages/oplsr/oplsr.8.0.1/opam index faef0e651a2..be99722509c 100644 --- a/packages/oplsr/oplsr.8.0.1/opam +++ b/packages/oplsr/oplsr.8.0.1/opam @@ -6,7 +6,6 @@ bug-reports: "https://github.com/UnixJunkie/oplsr/issues" dev-repo: "git+https://github.com/UnixJunkie/oplsr.git" license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception" build: ["dune" "build" "-p" name "-j" jobs] -install: ["R" "CMD" "BATCH" "install_pls.r"] depends: [ "batteries" "conf-gnuplot" @@ -33,7 +32,7 @@ https://www.jstatsoft.org/index.php/jss/article/view/v018i02/v18i02.pdf post-messages: """ Please interact with R to install needed things in user-space: R -install.packages('pls', repos='http://cran.r-project.org')""" {failure} +install.packages('pls', repos='http://cran.r-project.org')""" url { src: "https://github.com/UnixJunkie/oplsr/archive/v8.0.1.tar.gz" checksum: [ diff --git a/packages/orrandomForest/orrandomForest.1.0.0/opam b/packages/orrandomForest/orrandomForest.1.0.0/opam index fa3265196a0..5bbab905f50 100644 --- a/packages/orrandomForest/orrandomForest.1.0.0/opam +++ b/packages/orrandomForest/orrandomForest.1.0.0/opam @@ -6,8 +6,6 @@ bug-reports: "https://github.com/UnixJunkie/orrandomForest/issues" dev-repo: "git+https://github.com/UnixJunkie/orrandomForest.git" license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception" build: [ - ["R" "CMD" "BATCH" "install_randomForest.r"] - ["R" "CMD" "BATCH" "install_matrix.r"] ["jbuilder" "build" "-p" name "-j" jobs] ] depends: [ @@ -17,12 +15,11 @@ depends: [ "conf-r" "conf-gnuplot" {with-test} ] -x-ci-accept-failures: ["debian-unstable"] post-messages: [ "Please interact with R to install needed things in user-space: R install.packages('Marix', repos='http://cran.r-project.org') -install.packages('randomForest', repos='http://cran.r-project.org')" {failure} +install.packages('randomForest', repos='http://cran.r-project.org')" ] synopsis: "Classification or regression using Random Forests" description: """ diff --git a/packages/orrandomForest/orrandomForest.2.0.1/opam b/packages/orrandomForest/orrandomForest.2.0.1/opam index 95f55719447..bffbb80645a 100644 --- a/packages/orrandomForest/orrandomForest.2.0.1/opam +++ b/packages/orrandomForest/orrandomForest.2.0.1/opam @@ -8,10 +8,6 @@ license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception" build: [ ["dune" "build" "-p" name "-j" jobs] ] -install: [ - ["R" "CMD" "BATCH" "install_randomForest.r"] - ["R" "CMD" "BATCH" "install_matrix.r"] -] depends: [ "ocaml" "dune" @@ -20,12 +16,11 @@ depends: [ "conf-gnuplot" {with-test} "cpm" {with-test} ] -x-ci-accept-failures: ["debian-unstable"] post-messages: [ "Please interact with R to install needed things in user-space: R install.packages('Marix', repos='http://cran.r-project.org') -install.packages('randomForest', repos='http://cran.r-project.org')" {failure} +install.packages('randomForest', repos='http://cran.r-project.org')" ] synopsis: "Classification or regression using Random Forests" description: """ diff --git a/packages/orrandomForest/orrandomForest.3.0.0/opam b/packages/orrandomForest/orrandomForest.3.0.0/opam index 5964950a2ea..fdbd4fc3f35 100644 --- a/packages/orrandomForest/orrandomForest.3.0.0/opam +++ b/packages/orrandomForest/orrandomForest.3.0.0/opam @@ -8,10 +8,6 @@ license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception" build: [ ["dune" "build" "-p" name "-j" jobs] ] -install: [ - ["R" "CMD" "BATCH" "install_randomForest.r"] - ["R" "CMD" "BATCH" "install_matrix.r"] -] depends: [ "batteries" "conf-gnuplot" {with-test} @@ -24,12 +20,11 @@ depends: [ "ocaml" "parany" ] -x-ci-accept-failures: ["debian-unstable"] post-messages: [ "Please interact with R to install needed things in user-space: R install.packages('Marix', repos='http://cran.r-project.org') -install.packages('randomForest', repos='http://cran.r-project.org')" {failure} +install.packages('randomForest', repos='http://cran.r-project.org')" ] synopsis: "Classification or regression using Random Forests" description: """ diff --git a/packages/orsvm_e1071/orsvm_e1071.2.0.0/opam b/packages/orsvm_e1071/orsvm_e1071.2.0.0/opam index 4ad460d6f8c..7a3357c2833 100644 --- a/packages/orsvm_e1071/orsvm_e1071.2.0.0/opam +++ b/packages/orsvm_e1071/orsvm_e1071.2.0.0/opam @@ -6,8 +6,6 @@ bug-reports: "https://github.com/UnixJunkie/orsvm-e1071/issues" dev-repo: "git+https://github.com/UnixJunkie/orsvm-e1071.git" license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception" build: [ - ["R" "CMD" "BATCH" "install_e1071.r"] - ["R" "CMD" "BATCH" "install_svmpath.r"] ["jbuilder" "build" "-p" name "-j" jobs] ] depends: [ @@ -20,7 +18,6 @@ depends: [ "minicli" {with-test} "parmap" {with-test} ] -x-ci-accept-failures: ["debian-unstable"] synopsis: "OCaml wrapper to SVM R packages e1071 and svmpath." description: """ Some OCaml functions to drive the RBF and linear SVMs of the R e1071 package diff --git a/packages/orsvm_e1071/orsvm_e1071.3.0.0/opam b/packages/orsvm_e1071/orsvm_e1071.3.0.0/opam index e79b1b84b8e..dfca91e7183 100644 --- a/packages/orsvm_e1071/orsvm_e1071.3.0.0/opam +++ b/packages/orsvm_e1071/orsvm_e1071.3.0.0/opam @@ -6,8 +6,6 @@ bug-reports: "https://github.com/UnixJunkie/orsvm-e1071/issues" dev-repo: "git+https://github.com/UnixJunkie/orsvm-e1071.git" license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception" build: [ - ["R" "CMD" "BATCH" "install_e1071.r"] - ["R" "CMD" "BATCH" "install_svmpath.r"] ["jbuilder" "build" "-p" name "-j" jobs] ] depends: [ @@ -20,12 +18,11 @@ depends: [ "minicli" {with-test} "parmap" {with-test} ] -x-ci-accept-failures: ["debian-unstable"] post-messages: [ "Please interact with R to install needed things in user-space: R install.packages('e1071', repos='http://cran.r-project.org') -install.packages('svmpath', repos='http://cran.r-project.org')" {failure} +install.packages('svmpath', repos='http://cran.r-project.org')" ] synopsis: "OCaml wrapper to SVM R packages e1071 and svmpath." description: """ diff --git a/packages/orsvm_e1071/orsvm_e1071.3.0.1/opam b/packages/orsvm_e1071/orsvm_e1071.3.0.1/opam index 717b2bccbdf..1d0574f3548 100644 --- a/packages/orsvm_e1071/orsvm_e1071.3.0.1/opam +++ b/packages/orsvm_e1071/orsvm_e1071.3.0.1/opam @@ -22,7 +22,7 @@ post-messages: [ "Please interact with R to install needed things in user-space: R install.packages('e1071', repos='http://cran.r-project.org') -install.packages('svmpath', repos='http://cran.r-project.org')" {success} +install.packages('svmpath', repos='http://cran.r-project.org')" ] synopsis: "OCaml wrapper to SVM R packages e1071 and svmpath" description: """ diff --git a/packages/orsvm_e1071/orsvm_e1071.3.0.2/opam b/packages/orsvm_e1071/orsvm_e1071.3.0.2/opam index c32cf96e8b2..aa0eab2907c 100644 --- a/packages/orsvm_e1071/orsvm_e1071.3.0.2/opam +++ b/packages/orsvm_e1071/orsvm_e1071.3.0.2/opam @@ -22,7 +22,7 @@ post-messages: [ "Please interact with R to install needed things in user-space: R install.packages('e1071', repos='http://cran.r-project.org') -install.packages('svmpath', repos='http://cran.r-project.org')" {success} +install.packages('svmpath', repos='http://cran.r-project.org')" ] synopsis: "OCaml wrapper to SVM R packages e1071 and svmpath" description: """ diff --git a/packages/orsvm_e1071/orsvm_e1071.4.0.0/opam b/packages/orsvm_e1071/orsvm_e1071.4.0.0/opam index e8534a1823c..a367db354e9 100644 --- a/packages/orsvm_e1071/orsvm_e1071.4.0.0/opam +++ b/packages/orsvm_e1071/orsvm_e1071.4.0.0/opam @@ -22,7 +22,7 @@ post-messages: [ "Please interact with R to install needed things in user-space: R install.packages('e1071', repos='http://cran.r-project.org') -install.packages('svmpath', repos='http://cran.r-project.org')" {success} +install.packages('svmpath', repos='http://cran.r-project.org')" ] synopsis: "OCaml wrapper to SVM R packages e1071 and svmpath" description: """ diff --git a/packages/orxgboost/orxgboost.1.0.1/opam b/packages/orxgboost/orxgboost.1.0.1/opam index 0a7cfd066e1..8e7ea007f21 100644 --- a/packages/orxgboost/orxgboost.1.0.1/opam +++ b/packages/orxgboost/orxgboost.1.0.1/opam @@ -6,8 +6,6 @@ bug-reports: "https://github.com/UnixJunkie/orxgboost/issues" dev-repo: "git+https://github.com/UnixJunkie/orxgboost.git" license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception" build: [ - ["R" "CMD" "BATCH" "install_matrix.r"] - ["R" "CMD" "BATCH" "install_xgboost.r"] ["jbuilder" "build" "-p" name "-j" jobs] ] depends: [ @@ -18,12 +16,11 @@ depends: [ "batteries" {with-test} "cpm" {with-test} ] -x-ci-accept-failures: ["debian-unstable"] post-messages: [ "Please interact with R to install needed things in user-space: R install.packages('Marix', repos='http://cran.r-project.org') -install.packages('xgboost', repos='http://cran.r-project.org')" {failure} +install.packages('xgboost', repos='http://cran.r-project.org')" ] synopsis: "Gradient boosting for OCaml using the R xgboost package" description: """ diff --git a/packages/orxgboost/orxgboost.1.1.0/opam b/packages/orxgboost/orxgboost.1.1.0/opam index 7300835abc6..7cc86dadc71 100644 --- a/packages/orxgboost/orxgboost.1.1.0/opam +++ b/packages/orxgboost/orxgboost.1.1.0/opam @@ -6,8 +6,6 @@ bug-reports: "https://github.com/UnixJunkie/orxgboost/issues" dev-repo: "git+https://github.com/UnixJunkie/orxgboost.git" license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception" build: [ - ["R" "CMD" "BATCH" "install_matrix.r"] - ["R" "CMD" "BATCH" "install_xgboost.r"] ["dune" "build" "-p" name "-j" jobs] ] depends: [ @@ -18,12 +16,11 @@ depends: [ "batteries" {with-test} "cpm" {with-test} ] -x-ci-accept-failures: ["debian-unstable"] post-messages: [ "Please interact with R to install needed things in user-space: R install.packages('Marix', repos='http://cran.r-project.org') -install.packages('xgboost', repos='http://cran.r-project.org')" {failure} +install.packages('xgboost', repos='http://cran.r-project.org')" ] synopsis: "Gradient boosting for OCaml using the R xgboost package" description: """ diff --git a/packages/orxgboost/orxgboost.1.2.0/opam b/packages/orxgboost/orxgboost.1.2.0/opam index f261b3d4d06..94ad066cfec 100644 --- a/packages/orxgboost/orxgboost.1.2.0/opam +++ b/packages/orxgboost/orxgboost.1.2.0/opam @@ -6,8 +6,6 @@ bug-reports: "https://github.com/UnixJunkie/orxgboost/issues" dev-repo: "git+https://github.com/UnixJunkie/orxgboost.git" license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception" build: [ - ["R" "CMD" "BATCH" "install_matrix.r"] - ["R" "CMD" "BATCH" "install_xgboost.r"] ["dune" "build" "-p" name "-j" jobs] ] depends: [ @@ -18,12 +16,11 @@ depends: [ "batteries" {with-test} "cpm" {with-test} ] -x-ci-accept-failures: ["debian-unstable"] post-messages: [ "Please interact with R to install needed things in user-space: R install.packages('Marix', repos='http://cran.r-project.org') -install.packages('xgboost', repos='http://cran.r-project.org')" {failure} +install.packages('xgboost', repos='http://cran.r-project.org')" ] synopsis: "Gradient boosting for OCaml using the R xgboost package" description: """