diff --git a/.github/workflows/secretScan.yml b/.github/workflows/secretScan.yml new file mode 100644 index 0000000..1af40d6 --- /dev/null +++ b/.github/workflows/secretScan.yml @@ -0,0 +1,13 @@ +name: gitleaks + +on: [push, pull_request] + +jobs: + gitleaks: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v2 + with: + fetch-depth: '0' + - name: gitleaks-action + uses: gitleaks/gitleaks-action@v1.6.0 diff --git a/DESCRIPTION b/DESCRIPTION index 2684339..5e81ed6 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -18,7 +18,7 @@ Description: The 'salmix' package fits time-varying density curves to run adult Pacific salmon, though could also be applied to other kinds of data such as hydrographs, plant phenology (flowering, leaf out). License: GPL (>=3) -URL: https://ericward-noaa.github.io/phenomix, https://github.com/ericward-noaa/phenomix +URL: https://noaa-nwfsc.github.io/phenomix, https://github.com/noaa-nwfsc/phenomix Depends: R (>= 4.0.0) Imports: @@ -42,5 +42,5 @@ ByteCompile: true Encoding: UTF-8 LazyData: true Roxygen: list(markdown = TRUE) -RoxygenNote: 7.2.3 +RoxygenNote: 7.3.1 SystemRequirements: GNU make diff --git a/README.Rmd b/README.Rmd index f4f7cec..0212aa9 100644 --- a/README.Rmd +++ b/README.Rmd @@ -17,16 +17,16 @@ knitr::opts_chunk$set( # phenomix R package for fitting distributions to run timing data via maximum likelihood -[![R build status](https://github.com/ericward-noaa/phenomix/workflows/R-CMD-check/badge.svg)](https://github.com/ericward-noaa/phenomix/actions) +[![R build status](https://github.com/noaa-nwfsc/phenomix/workflows/R-CMD-check/badge.svg)](https://github.com/noaa-nwfsc/phenomix/actions) -pkgdown site: [https://ericward-noaa.github.io/phenomix/](https://ericward-noaa.github.io/phenomix/) +pkgdown site: [https://noaa-nwfsc.github.io/phenomix/](https://noaa-nwfsc.github.io/phenomix/) ## Installation You can install phenomix with: ```{r, eval=TRUE} -remotes::install_github("ericward-noaa/phenomix",build_vignettes = TRUE) +remotes::install_github("noaa-nwfsc/phenomix",build_vignettes = TRUE) ``` Load libraries @@ -68,7 +68,7 @@ ggplot(df, aes(doy,exp(y),col=year,group=year)) + ## Examples -The main functions are `create_data()` and `fit()`. See `?create_data` and `?fit` for additional details and examples. A vignette includes additional detail, and examples of several models as well as function arguments available [https://ericward-noaa.github.io/phenomix/](https://ericward-noaa.github.io/phenomix/). +The main functions are `create_data()` and `fit()`. See `?create_data` and `?fit` for additional details and examples. A vignette includes additional detail, and examples of several models as well as function arguments available [https://noaa-nwfsc.github.io/phenomix/](https://noaa-nwfsc.github.io/phenomix/). ## References diff --git a/README.md b/README.md index 3d389ef..7eea037 100644 --- a/README.md +++ b/README.md @@ -7,17 +7,31 @@ R package for fitting distributions to run timing data via maximum likelihood [![R build -status](https://github.com/ericward-noaa/phenomix/workflows/R-CMD-check/badge.svg)](https://github.com/ericward-noaa/phenomix/actions) +status](https://github.com/noaa-nwfsc/phenomix/workflows/R-CMD-check/badge.svg)](https://github.com/noaa-nwfsc/phenomix/actions) -[![DOI](https://zenodo.org/badge/243336401.svg)](https://zenodo.org/badge/latestdoi/243336401) -pkgdown site: +pkgdown site: ## Installation You can install phenomix with: ``` r -remotes::install_github("ericward-noaa/phenomix",build_vignettes = TRUE) +remotes::install_github("noaa-nwfsc/phenomix",build_vignettes = TRUE) +#> Downloading GitHub repo noaa-nwfsc/phenomix@HEAD +#> +#> ── R CMD build ───────────────────────────────────────────────────────────────── +#> checking for file ‘/private/var/folders/ts/4x6hzmfx7d52vbhjqmrs_3pw0000gp/T/RtmpmdCE3X/remotes13c339d5e769/noaa-nwfsc-phenomix-9f8e792/DESCRIPTION’ ... ✔ checking for file ‘/private/var/folders/ts/4x6hzmfx7d52vbhjqmrs_3pw0000gp/T/RtmpmdCE3X/remotes13c339d5e769/noaa-nwfsc-phenomix-9f8e792/DESCRIPTION’ +#> ─ preparing ‘phenomix’: +#> checking DESCRIPTION meta-information ... ✔ checking DESCRIPTION meta-information +#> ─ cleaning src +#> ─ installing the package to build vignettes +#> creating vignettes ... ✔ creating vignettes (1m 39.8s) +#> ─ cleaning src +#> ─ checking for LF line-endings in source and make files and shell scripts +#> ─ checking for empty or unneeded directories +#> ─ building ‘phenomix_1.0.4.tar.gz’ +#> +#> ``` Load libraries @@ -25,19 +39,24 @@ Load libraries ``` r library(phenomix) library(ggplot2) +#> Warning: package 'ggplot2' was built under R version 4.3.2 ``` ## Functions -The package phenomix provides a suite of curve fitting to describe data +The package pheomix provides a suite of curve fitting to describe data that may be generated from a process when distributions in time might be concentrated (from fisheries, this occurs with counts over time of salmon returning from the ocean to spawn or juvenile fish emigrating from streams to the ocean). -![Predicted (black line) and observed counts (red dots) for hypothetical -dataset. Multiple observations may exist for some days, or no -observations on others.](README-figs/unnamed-chunk-5-1.png) +
+ + +
In a given year, the curve might be described by a symmetric or asymmetric Gaussian or Student-t distribution (shown here in log-scale @@ -45,14 +64,14 @@ on the y-axis). Questions of interest might be - are the means (x-axis) shifting through time? - are the variances shifting through time? - does the model support a symmetric or asymmetric distribution? -![](man/figures/unnamed-chunk-6-1.png) +![](README-figs/unnamed-chunk-6-1.png) ## Examples The main functions are `create_data()` and `fit()`. See `?create_data` and `?fit` for additional details and examples. A vignette includes additional detail, and examples of several models as well as function -arguments available . +arguments available . ## References diff --git a/docs/404.html b/docs/404.html index f58d70c..f9eabe2 100644 --- a/docs/404.html +++ b/docs/404.html @@ -66,7 +66,7 @@
  • - + diff --git a/docs/articles/a1_examples.html b/docs/articles/a1_examples.html index 735c19a..7d9be3f 100644 --- a/docs/articles/a1_examples.html +++ b/docs/articles/a1_examples.html @@ -67,7 +67,7 @@
  • - + @@ -88,9 +88,9 @@

    Fitting time varying phenology models with the phenomix package

    -

    2023-07-10

    +

    2024-02-27

    - Source: vignettes/a1_examples.Rmd + Source: vignettes/a1_examples.Rmd @@ -99,11 +99,8 @@

    2023-07-10

     library(ggplot2)
-library(phenomix)
-#> Warning in checkMatrixPackageVersion(): Package version inconsistency detected.
-#> TMB was built with Matrix version 1.5.4
-#> Current Matrix version is 1.5.4.1
-#> Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
+#> Warning: package 'ggplot2' was built under R version 4.3.2
+library(phenomix)
 library(dplyr)
 library(TMB)
    diff --git a/docs/articles/a1_examples_files/figure-html/unnamed-chunk-14-1.png b/docs/articles/a1_examples_files/figure-html/unnamed-chunk-14-1.png index 03134ce..0285b6e 100644 Binary files a/docs/articles/a1_examples_files/figure-html/unnamed-chunk-14-1.png and b/docs/articles/a1_examples_files/figure-html/unnamed-chunk-14-1.png differ diff --git a/docs/articles/a1_examples_files/figure-html/unnamed-chunk-16-1.png b/docs/articles/a1_examples_files/figure-html/unnamed-chunk-16-1.png index fe86385..e198bf7 100644 Binary files a/docs/articles/a1_examples_files/figure-html/unnamed-chunk-16-1.png and b/docs/articles/a1_examples_files/figure-html/unnamed-chunk-16-1.png differ diff --git a/docs/articles/a2_covariates.html b/docs/articles/a2_covariates.html index 01a2ac8..48644df 100644 --- a/docs/articles/a2_covariates.html +++ b/docs/articles/a2_covariates.html @@ -67,7 +67,7 @@
  • - + @@ -87,9 +87,9 @@

    Including covariates

    -

    2023-07-10

    +

    2024-02-27

    - Source: vignettes/a2_covariates.Rmd + Source: vignettes/a2_covariates.Rmd
    @@ -98,11 +98,8 @@

    2023-07-10

     library(ggplot2)
-library(phenomix)
-#> Warning in checkMatrixPackageVersion(): Package version inconsistency detected.
-#> TMB was built with Matrix version 1.5.4
-#> Current Matrix version is 1.5.4.1
-#> Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
+#> Warning: package 'ggplot2' was built under R version 4.3.2
+library(phenomix)
 library(dplyr)
 library(TMB)
    diff --git a/docs/articles/a3_troubleshooting.html b/docs/articles/a3_troubleshooting.html index dabf058..93f4b43 100644 --- a/docs/articles/a3_troubleshooting.html +++ b/docs/articles/a3_troubleshooting.html @@ -67,7 +67,7 @@
  • - + @@ -87,9 +87,9 @@

    Troubleshooting

    -

    2023-07-10

    +

    2024-02-27

    - Source: vignettes/a3_troubleshooting.Rmd + Source: vignettes/a3_troubleshooting.Rmd
    @@ -98,11 +98,8 @@

    2023-07-10

     library(ggplot2)
-library(phenomix)
-#> Warning in checkMatrixPackageVersion(): Package version inconsistency detected.
-#> TMB was built with Matrix version 1.5.4
-#> Current Matrix version is 1.5.4.1
-#> Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
+#> Warning: package 'ggplot2' was built under R version 4.3.2
+library(phenomix)
 library(dplyr)
 library(TMB)
    diff --git a/docs/articles/a4_derived.html b/docs/articles/a4_derived.html index b5e41c0..de8ba21 100644 --- a/docs/articles/a4_derived.html +++ b/docs/articles/a4_derived.html @@ -67,7 +67,7 @@
  • - + @@ -87,9 +87,9 @@

    Extracting estimated and derived parameters

    -

    2023-07-10

    +

    2024-02-27

    - Source: vignettes/a4_derived.Rmd + Source: vignettes/a4_derived.Rmd
    @@ -98,11 +98,8 @@

    2023-07-10

     library(ggplot2)
-library(phenomix)
-#> Warning in checkMatrixPackageVersion(): Package version inconsistency detected.
-#> TMB was built with Matrix version 1.5.4
-#> Current Matrix version is 1.5.4.1
-#> Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
+#> Warning: package 'ggplot2' was built under R version 4.3.2
+library(phenomix)
 library(dplyr)
 library(TMB)

    We will start with the original simple model fit to the diff --git a/docs/articles/index.html b/docs/articles/index.html index 2b84b08..924627e 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -45,7 +45,7 @@

  • - + diff --git a/docs/authors.html b/docs/authors.html index cb879a5..60d4aa9 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -45,7 +45,7 @@
  • - + @@ -80,20 +80,20 @@

    Authors

    Citation

    - Source: DESCRIPTION + Source: DESCRIPTION
    -

    Ward EJ (2023). +

    Ward EJ (2024). phenomix: Fit Density Curves to Peak Timing Data that Varies over Time. -https://ericward-noaa.github.io/phenomix, https://github.com/ericward-noaa/phenomix. +https://noaa-nwfsc.github.io/phenomix, https://github.com/noaa-nwfsc/phenomix. 

    @Manual{,
   title = {phenomix: Fit Density Curves to Peak Timing Data that Varies over Time},
   author = {Eric J. Ward},
-  year = {2023},
-  note = {https://ericward-noaa.github.io/phenomix, https://github.com/ericward-noaa/phenomix},
+  year = {2024},
+  note = {https://noaa-nwfsc.github.io/phenomix, https://github.com/noaa-nwfsc/phenomix},
 }
    diff --git a/docs/index.html b/docs/index.html index 94c673f..6c36888 100644 --- a/docs/index.html +++ b/docs/index.html @@ -71,7 +71,7 @@
  • - + @@ -92,33 +92,48 @@

    phenomix

    R package for fitting distributions to run timing data via maximum likelihood

    -

    R build status

    -

    DOI pkgdown site: https://ericward-noaa.github.io/phenomix/

    +

    R build status

    +

    pkgdown site: https://noaa-nwfsc.github.io/phenomix/

    Installation

    You can install phenomix with:

    -remotes::install_github("ericward-noaa/phenomix",build_vignettes = TRUE)
    +remotes::install_github("noaa-nwfsc/phenomix",build_vignettes = TRUE) +#> Downloading GitHub repo noaa-nwfsc/phenomix@HEAD +#> +#> ── R CMD build ───────────────────────────────────────────────────────────────── +#> checking for file ‘/private/var/folders/ts/4x6hzmfx7d52vbhjqmrs_3pw0000gp/T/RtmpmdCE3X/remotes13c339d5e769/noaa-nwfsc-phenomix-9f8e792/DESCRIPTION’ ... ✔ checking for file ‘/private/var/folders/ts/4x6hzmfx7d52vbhjqmrs_3pw0000gp/T/RtmpmdCE3X/remotes13c339d5e769/noaa-nwfsc-phenomix-9f8e792/DESCRIPTION’ +#> ─ preparing ‘phenomix’: +#> checking DESCRIPTION meta-information ... ✔ checking DESCRIPTION meta-information +#> ─ cleaning src +#> ─ installing the package to build vignettes +#> creating vignettes ... ✔ creating vignettes (1m 39.8s) +#> ─ cleaning src +#> ─ checking for LF line-endings in source and make files and shell scripts +#> ─ checking for empty or unneeded directories +#> ─ building ‘phenomix_1.0.4.tar.gz’ +#> +#>

    Load libraries

    +library(phenomix) +library(ggplot2) +#> Warning: package 'ggplot2' was built under R version 4.3.2

    Functions

    The package pheomix provides a suite of curve fitting to describe data that may be generated from a process when distributions in time might be concentrated (from fisheries, this occurs with counts over time of salmon returning from the ocean to spawn or juvenile fish emigrating from streams to the ocean).

    -
    -Predicted (black line) and observed counts (red dots) for hypothetical dataset. Multiple observations may exist for some days, or no observations on others.
    Predicted (black line) and observed counts (red dots) for hypothetical dataset. Multiple observations may exist for some days, or no observations on others.
    -
    -

    In a given year, the curve might be described by a symmetric or asymmetric Gaussian or Student-t distribution (shown here in log-scale on the y-axis). Questions of interest might be - are the means (x-axis) shifting through time? - are the variances shifting through time? - does the model support a symmetric or asymmetric distribution?

    -

    +
    Predicted (black line) and observed counts (red dots) for hypothetical dataset. Multiple observations may exist for some days, or no observations on others.

    In a given year, the curve might be described by a symmetric or asymmetric Gaussian or Student-t distribution (shown here in log-scale on the y-axis). Questions of interest might be - are the means (x-axis) shifting through time? - are the variances shifting through time? - does the model support a symmetric or asymmetric distribution?

    +

    Examples

    -

    The main functions are create_data() and fit(). See ?create_data and ?fit for additional details and examples. A vignette includes additional detail, and examples of several models as well as function arguments available https://ericward-noaa.github.io/phenomix/.

    +

    The main functions are create_data() and fit(). See ?create_data and ?fit for additional details and examples. A vignette includes additional detail, and examples of several models as well as function arguments available https://noaa-nwfsc.github.io/phenomix/.

    References @@ -143,7 +158,7 @@

    NOAA Disclaimer

    Links

    diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 8ad33c2..3de1fef 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -6,5 +6,5 @@ articles: a2_covariates: a2_covariates.html a3_troubleshooting: a3_troubleshooting.html a4_derived: a4_derived.html -last_built: 2023-07-10T17:03Z +last_built: 2024-02-27T14:58Z diff --git a/docs/reference/chum.html b/docs/reference/chum.html index 7f93e21..68ba8b7 100644 --- a/docs/reference/chum.html +++ b/docs/reference/chum.html @@ -53,7 +53,7 @@
  • - + @@ -71,7 +71,7 @@

    Count data collected by Washington Department of Fish and Wildlife on chum salmon from the Skagit River (Washington state). Each row of the dataframe contains an observation ("number") on a given date ("date"). The year ("year") and calendar day ("doy") are also included.

    - Source: R/data.R + Source: R/data.R diff --git a/docs/reference/create_data.html b/docs/reference/create_data.html index 27f41fe..0de136a 100644 --- a/docs/reference/create_data.html +++ b/docs/reference/create_data.html @@ -45,7 +45,7 @@
  • - + @@ -60,7 +60,7 @@

    Create data file for fitting time varying run timing distributions with TMB

    - Source: R/create_data.R + Source: R/create_data.R
    diff --git a/docs/reference/extract_all.html b/docs/reference/extract_all.html index 1d52774..5fdec68 100644 --- a/docs/reference/extract_all.html +++ b/docs/reference/extract_all.html @@ -46,7 +46,7 @@
  • - + @@ -61,7 +61,7 @@

    Output processing function to be called by user

    - Source: R/extract.R + Source: R/extract.R
    diff --git a/docs/reference/extract_annual.html b/docs/reference/extract_annual.html index daaa1f6..78c28be 100644 --- a/docs/reference/extract_annual.html +++ b/docs/reference/extract_annual.html @@ -45,7 +45,7 @@
  • - + @@ -60,7 +60,7 @@

    Output processing function to be called by user

    - Source: R/extract.R + Source: R/extract.R
    diff --git a/docs/reference/extract_lower.html b/docs/reference/extract_lower.html index baa4008..9be4fb2 100644 --- a/docs/reference/extract_lower.html +++ b/docs/reference/extract_lower.html @@ -45,7 +45,7 @@
  • - + @@ -60,7 +60,7 @@

    Output processing function to be called by user

    - Source: R/extract.R + Source: R/extract.R
    diff --git a/docs/reference/extract_means.html b/docs/reference/extract_means.html index ea57313..68d5c07 100644 --- a/docs/reference/extract_means.html +++ b/docs/reference/extract_means.html @@ -45,7 +45,7 @@
  • - + @@ -60,7 +60,7 @@

    Output processing function to be called by user

    - Source: R/extract.R + Source: R/extract.R
    diff --git a/docs/reference/extract_sigma.html b/docs/reference/extract_sigma.html index c0a5fe3..9b0da95 100644 --- a/docs/reference/extract_sigma.html +++ b/docs/reference/extract_sigma.html @@ -45,7 +45,7 @@
  • - + @@ -60,7 +60,7 @@

    Output processing function to be called by user

    - Source: R/extract.R + Source: R/extract.R
    diff --git a/docs/reference/extract_theta.html b/docs/reference/extract_theta.html index f937258..0f9465e 100644 --- a/docs/reference/extract_theta.html +++ b/docs/reference/extract_theta.html @@ -45,7 +45,7 @@
  • - + @@ -60,7 +60,7 @@

    Output processing function to be called by user

    - Source: R/extract.R + Source: R/extract.R
    diff --git a/docs/reference/extract_upper.html b/docs/reference/extract_upper.html index 26352dc..6e226e1 100644 --- a/docs/reference/extract_upper.html +++ b/docs/reference/extract_upper.html @@ -45,7 +45,7 @@
  • - + @@ -60,7 +60,7 @@

    Output processing function to be called by user

    - Source: R/extract.R + Source: R/extract.R
    diff --git a/docs/reference/fishdist.html b/docs/reference/fishdist.html index 9937aa0..c444abe 100644 --- a/docs/reference/fishdist.html +++ b/docs/reference/fishdist.html @@ -45,7 +45,7 @@
  • - + @@ -60,7 +60,7 @@

    Example simulate data for fish distributions from multiple years

    - Source: R/data.R + Source: R/data.R
    diff --git a/docs/reference/fit.html b/docs/reference/fit.html index afcc276..dc439bf 100644 --- a/docs/reference/fit.html +++ b/docs/reference/fit.html @@ -46,7 +46,7 @@
  • - + @@ -61,7 +61,7 @@

    Fitting function to be called by user

    - Source: R/fit.R + Source: R/fit.R
    diff --git a/docs/reference/fixef.phenomix.html b/docs/reference/fixef.phenomix.html index 17447c4..31597b5 100644 --- a/docs/reference/fixef.phenomix.html +++ b/docs/reference/fixef.phenomix.html @@ -45,7 +45,7 @@
  • - + @@ -60,7 +60,7 @@

    Get fixed effects parameters from model object, copying glmmTMB 'fast' implementation

    - Source: R/methods.R + Source: R/methods.R
    diff --git a/docs/reference/get_sdreport.html b/docs/reference/get_sdreport.html index ded9e70..dffc066 100644 --- a/docs/reference/get_sdreport.html +++ b/docs/reference/get_sdreport.html @@ -45,7 +45,7 @@
  • - + @@ -60,7 +60,7 @@

    Get sdreport for predictions / coefficients, copying glmmTMB 'fast' implementation

    - Source: R/methods.R + Source: R/methods.R
    diff --git a/docs/reference/index.html b/docs/reference/index.html index f8e1104..ad7fad5 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -45,7 +45,7 @@
  • - + diff --git a/docs/reference/limits.html b/docs/reference/limits.html index a45bb17..bffdb3d 100644 --- a/docs/reference/limits.html +++ b/docs/reference/limits.html @@ -45,7 +45,7 @@
  • - + @@ -60,7 +60,7 @@

    Internal function to assign upper and lower bounds to parameters, based on their names

    - Source: R/limits.R + Source: R/limits.R
    diff --git a/docs/reference/pars.html b/docs/reference/pars.html index bd14c8e..8ee1ff9 100644 --- a/docs/reference/pars.html +++ b/docs/reference/pars.html @@ -45,7 +45,7 @@
  • - + @@ -60,7 +60,7 @@

    Get parameters from model object, copying glmmTMB 'fast' implementation

    - Source: R/methods.R + Source: R/methods.R
    diff --git a/docs/reference/phenomix-package.html b/docs/reference/phenomix-package.html index 3e0ecaa..ae1f61d 100644 --- a/docs/reference/phenomix-package.html +++ b/docs/reference/phenomix-package.html @@ -45,7 +45,7 @@
  • - + @@ -60,7 +60,7 @@

    Plotting function to be called by user

    - Source: R/plot_diagnostics.R + Source: R/plot_diagnostics.R
    diff --git a/docs/reference/ranef.phenomix.html b/docs/reference/ranef.phenomix.html index 7acd978..728016f 100644 --- a/docs/reference/ranef.phenomix.html +++ b/docs/reference/ranef.phenomix.html @@ -45,7 +45,7 @@
  • - + @@ -60,7 +60,7 @@

    Get random effects parameters from model object, copying glmmTMB 'fast' implementation

    - Source: R/methods.R + Source: R/methods.R
    diff --git a/man/phenomix-package.Rd b/man/phenomix-package.Rd index de4e4dc..2611212 100644 --- a/man/phenomix-package.Rd +++ b/man/phenomix-package.Rd @@ -2,9 +2,28 @@ % Please edit documentation in R/phenomix-package.R \docType{package} \name{phenomix-package} +\alias{phenomix} \alias{phenomix-package} \title{The 'phenomix' package.} \description{ A DESCRIPTION OF THE PACKAGE +} +\seealso{ +Useful links: +\itemize{ + \item \url{https://noaa-nwfsc.github.io/phenomix} + \item \url{https://github.com/noaa-nwfsc/phenomix} +} + +} +\author{ +\strong{Maintainer}: Eric J. Ward \email{eric.ward@noaa.gov} + +Other contributors: +\itemize{ + \item Samantha M. Wilson [contributor] + \item Joseph H. Anderson [contributor] +} + } \keyword{internal}