HiC-Pro not reporting fragment size in allValidPairs file

[sunilnahata]

Hi Nicolas,

I've been using HiC-Pro for a while now for Micro-C and I noticed that it is supposed to also report the fragment size according to your website which says the following:

"The validPairs are stored using a simple tab-delimited text format ;
read name / chr_reads1 / pos_reads1 / strand_reads1 / chr_reads2 / pos_reads2 / strand_reads2 / fragment_size [/ allele_specific_tag]"

However, do not find any sch information and instead get extra columns than what is specified

I'm not sure if I'm missing out on something here or if the files aren't being processed the way they should. Please let me know.

Thanks,
Sunil