From 6b6f2b7087373109bd6300322594cb442a4639bd Mon Sep 17 00:00:00 2001 From: e-gugliotti-NOAA Date: Thu, 26 Oct 2023 10:28:54 -0400 Subject: [PATCH] update ss3 repo names --- README.Rmd | 2 +- tests/testthat/test-runSSMSE.R | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/README.Rmd b/README.Rmd index 5f7308d0..8855966d 100644 --- a/README.Rmd +++ b/README.Rmd @@ -69,7 +69,7 @@ You can read the help files with ?SSMSE ``` -Note that when SSMSE is installed, [Stock Synthesis](https://github.com/nmfs-stock-synthesis/stock-synthesis) binaries are included in the `SSMSE/bin/` folder downloaded to the user's local R library. Currently, the Stock Synthesis 3.30.18 is included. Separate binaries are included for Windows, Mac and Linux. Users may swap out these binaries, but SSMSE is not tested with other versions of SS3. +Note that when SSMSE is installed, [Stock Synthesis](https://github.com/nmfs-ost/ss3-source-code) binaries are included in the `SSMSE/bin/` folder downloaded to the user's local R library. Currently, the Stock Synthesis 3.30.18 is included. Separate binaries are included for Windows, Mac and Linux. Users may swap out these binaries, but SSMSE is not tested with other versions of SS3. # Troubleshooting Installation diff --git a/tests/testthat/test-runSSMSE.R b/tests/testthat/test-runSSMSE.R index 83abffe2..ed3e422c 100644 --- a/tests/testthat/test-runSSMSE.R +++ b/tests/testthat/test-runSSMSE.R @@ -248,7 +248,7 @@ test_that("cod works when treated as a custom model and run_EM_last_yr = TRUE wo test_that("run_SSMSE runs with mean size at age and mean body length", { skip_on_cran() # this test is skipped unless the model it needs to run is available. - # model from https://github.com/nmfs-stock-synthesis/ss-test-models/tree/main/models/Simple_with_Discard + # model from https://github.com/nmfs-ost/ss3-test-models/tree/main/models/Simple_with_Discard skip_if(!file.exists(file.path(extdat_path, "models", "Simple_with_Discard"))) size_age_temp_path <- file.path(temp_path, "Simple_with_Discard") dir.create(size_age_temp_path)