Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Fix multiqc input channels #357

Merged
merged 2 commits into from
Aug 13, 2024
Merged

Fix multiqc input channels #357

merged 2 commits into from
Aug 13, 2024

Conversation

grst
Copy link
Member

@grst grst commented Aug 13, 2024

Just the download test failed in the release PR. How can nf-test have possibly passed without that 🤔 ?

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/scrnaseq branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@github-actions GitHub Actions
Copy link

github-actions bot commented Aug 13, 2024 •
edited
Loading

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit de7007c

+| ✅ 204 tests passed       |+
#| ❔   3 tests were ignored |#
!| ❗   4 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: 2.7.1
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.14.1
  • Run at 2024-08-13 10:05:26

apeltzer
apeltzer approved these changes Aug 13, 2024
View reviewed changes
Copy link
Member

@apeltzer apeltzer left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Easy one, lgtm 👍🏻

@grst grst merged commit 2dd8465 into dev Aug 13, 2024
13 checks passed
@grst grst deleted the fix-multiqc branch August 13, 2024 11:18
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@apeltzer apeltzer apeltzer approved these changes

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
2 participants
@grst @apeltzer