From 8b76b0eef58eddcf0d694c6c8cecd56f063f6f8d Mon Sep 17 00:00:00 2001
From: subwaystation <simon.heumos@qbic.uni-tuebingen.de>
Date: Tue, 18 Jul 2023 11:09:13 +0200
Subject: [PATCH] address missing docs for MultiQC output

---
 docs/output.md | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/docs/output.md b/docs/output.md
index 0c8cb96..e6c53f9 100644
--- a/docs/output.md
+++ b/docs/output.md
@@ -357,6 +357,12 @@ The order of the sortings:
 
 ## MultiQC
 
+In the ODGI table section of the MultiQC report, it can happen that one observes the actual sample name and `seqwish`.
+The `seqwish` sample is the graph which was produced by [seqwish](#seqwish).
+The named sample, which just contains the sample name in the name is the final graph:
+
+- [seqwish](#seqwish) -> [smoothxg](#smoothxg) -> [gfaffix](#gfaffix) -> [odgi build](odgi-build) -> [odgi unchop](#odgi-unchop) -> [odgi sort](#odgi-sort)
+
 <details markdown="1">
 <summary>Output files</summary>