diff --git a/docs/images/pangenome_workflow.svg b/docs/images/pangenome_workflow.svg index e493413..c7cf257 100644 --- a/docs/images/pangenome_workflow.svg +++ b/docs/images/pangenome_workflow.svg @@ -9,7 +9,7 @@ height="1122.52" viewBox="0 0 2700 1122.52" sodipodi:docname="pangenome_workflow.svg" - inkscape:version="1.2.2 (b0a8486541, 2022-12-01)" + inkscape:version="1.3.2 (091e20ef0f, 2023-11-25, custom)" inkscape:export-filename="pangenome_workflow.png" inkscape:export-xdpi="68.26667" inkscape:export-ydpi="68.26667" @@ -626,7 +626,11 @@ clipPathUnits="userSpaceOnUse" id="clipPath204-9-6-2-6-93">All vs. All Alignmentwfmashseqwishsmoothxggfaffixvg deconstructbcftoolsodgi statsodgi buildodgi vizodgi layoutodgi drawMultiQCGraph InductionSmooth GraphODGI Format1D VIZCall VariantsRemove Spare NodesVCF Statistics2D Layout2D VIZGraph StatisticsReportingvg viewTo GFApngLegendMain Data FlowOptional Data FlowReporting Data FlowMain File OutputOptional File OutputCommunity Data FlowMultiQCReportingodgi statsodgi vizodgi layoutodgi draw1D VIZ2D Layout2D VIZGraph StatisticsAll vs. All Approx. MappingAll vs. All Approx. Mappingwfmashpaf2net.pypaf2Netpaf2Netfasta fasta fasta fasta fasta Split Approx MappingsSplit Approx Mappings In Chunks In Chunkssplit_approx_mappings_in_chunks.pysplit_apprx_mpps_in_cs.pyBase-Level AlignmentwfmashwfmashAll vs. All All vs. All Approx. MappingApprox. Mappingwfmashwfmashfasta net2communities.pynet2cs.pynet2net2CommunitiesCommunitiesextractextractCommunitiesCommunitiesfaidxCombine Communitiesodgi squeezefor each for each communityfor each chunkfor each chunkcombine communitiescombine communitiesBase-Level Alignment + style="stroke-width:4" />DataflowsMain FlowOptional FlowReporting FlowMain FilesOptional FilesCommunity Flow