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Add assembled check to samplesheet, fix report use read_rearrangement #968

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Add assembled check to samplesheet, fix report use read_rearrangement

Add assembled check to samplesheet, fix report use read_rearrangement #968

Run time

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Job Run time
Run pipeline with test data (22.10.1)
5m 50s
Run pipeline with test data (latest-everything)
5m 50s
Run workflow test with different profiles (22.10.1, test_tcr)
5m 51s
Run workflow test with different profiles (22.10.1, test_no_umi)
1m 25s
Run workflow test with different profiles (22.10.1, test_nocluster)
5m 51s
Run workflow test with different profiles (22.10.1, test_fetchimgt)
5m 50s
Run workflow test with different profiles (22.10.1, test_assembled_hs)
5m 53s
Run workflow test with different profiles (22.10.1, test_assembled_mm)
5m 50s
Run workflow test with different profiles (latest-everything, test_tcr)
5m 50s
Run workflow test with different profiles (latest-everything, test_no_umi)
5m 51s
Run workflow test with different profiles (latest-everything, test_nocluster)
5m 48s
Run workflow test with different profiles (latest-everything, test_fetchimgt)
5m 50s
Run workflow test with different profiles (latest-everything, test_assembled_hs)
5m 49s
Run workflow test with different profiles (latest-everything, test_assembled_mm)
5m 50s
1h 17m 18s