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Add assembled check to samplesheet, fix report use read_rearrangement #968

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Add assembled check to samplesheet, fix report use read_rearrangement

Add assembled check to samplesheet, fix report use read_rearrangement #968

Triggered via pull request July 19, 2023 14:14
@ggabernetggabernet
synchronize #266
ggabernet:dev
Status Cancelled
Total duration 6m 21s
Artifacts 1

ci.yml

on: pull_request
Matrix: Run pipeline with test data
Matrix: Run workflow test with different profiles
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27 errors and 1 warning
Run workflow test with different profiles (22.10.1, test_no_umi)
Process completed with exit code 1.
Run pipeline with test data (latest-everything)
Canceling since a higher priority waiting request for 'nf-core CI-266' exists
Run pipeline with test data (latest-everything)
The operation was canceled.
Run workflow test with different profiles (22.10.1, test_assembled_mm)
Canceling since a higher priority waiting request for 'nf-core CI-266' exists
Run workflow test with different profiles (22.10.1, test_assembled_mm)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_nocluster)
Canceling since a higher priority waiting request for 'nf-core CI-266' exists
Run workflow test with different profiles (latest-everything, test_nocluster)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_no_umi)
Canceling since a higher priority waiting request for 'nf-core CI-266' exists
Run workflow test with different profiles (latest-everything, test_no_umi)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_fetchimgt)
Canceling since a higher priority waiting request for 'nf-core CI-266' exists
Run workflow test with different profiles (latest-everything, test_fetchimgt)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_tcr)
Canceling since a higher priority waiting request for 'nf-core CI-266' exists
Run workflow test with different profiles (latest-everything, test_tcr)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_assembled_hs)
Canceling since a higher priority waiting request for 'nf-core CI-266' exists
Run workflow test with different profiles (latest-everything, test_assembled_hs)
The operation was canceled.
Run workflow test with different profiles (22.10.1, test_fetchimgt)
Canceling since a higher priority waiting request for 'nf-core CI-266' exists
Run workflow test with different profiles (22.10.1, test_fetchimgt)
The operation was canceled.
Run workflow test with different profiles (22.10.1, test_nocluster)
Canceling since a higher priority waiting request for 'nf-core CI-266' exists
Run workflow test with different profiles (22.10.1, test_nocluster)
The operation was canceled.
Run workflow test with different profiles (22.10.1, test_tcr)
Canceling since a higher priority waiting request for 'nf-core CI-266' exists
Run workflow test with different profiles (22.10.1, test_tcr)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_assembled_mm)
Canceling since a higher priority waiting request for 'nf-core CI-266' exists
Run workflow test with different profiles (latest-everything, test_assembled_mm)
The operation was canceled.
Run workflow test with different profiles (22.10.1, test_assembled_hs)
Canceling since a higher priority waiting request for 'nf-core CI-266' exists
Run workflow test with different profiles (22.10.1, test_assembled_hs)
The operation was canceled.
Run pipeline with test data (22.10.1)
Canceling since a higher priority waiting request for 'nf-core CI-266' exists
Run pipeline with test data (22.10.1)
The operation was canceled.
Run workflow test with different profiles (22.10.1, test_no_umi)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Artifacts

Produced during runtime
Name Size
logs-test_no_umi Expired
19.6 MB