Add assembled check to samplesheet, fix report use read_rearrangement #960

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Triggered via pull request June 23, 2023 14:48

ggabernet

synchronize #266

ggabernet:dev

Status Failure

Total duration 1h 11m 21s

Artifacts 6

This run and associated checks have been archived and are scheduled for deletion. Learn more about checks retention

ci.yml

on: pull_request

Matrix: Run pipeline with test data

Matrix: Run workflow test with different profiles

Annotations

15 errors and 2 warnings

Run workflow test with different profiles (22.10.1, test_assembled_mm)

Process completed with exit code 1.

Run workflow test with different profiles (latest-everything, test_no_umi)

Process completed with exit code 1.

Run workflow test with different profiles (latest-everything, test_assembled_mm)

Process completed with exit code 1.

Run workflow test with different profiles (22.10.1, test_assembled_hs)

Process completed with exit code 1.

Run workflow test with different profiles (22.10.1, test_no_umi)

Process completed with exit code 1.

Run workflow test with different profiles (latest-everything, test_assembled_hs)

Process completed with exit code 1.

Run pipeline with test data (22.10.1)

Process completed with exit code 1.

Run pipeline with test data (latest-everything)

The job was canceled because "_22_10_1" failed.

Run pipeline with test data (latest-everything)

The operation was canceled.

Run workflow test with different profiles (22.10.1, test_nocluster)

Process completed with exit code 1.

Run workflow test with different profiles (latest-everything, test_nocluster)

Process completed with exit code 1.

Run workflow test with different profiles (latest-everything, test_fetchimgt)

Process completed with exit code 1.

Run workflow test with different profiles (22.10.1, test_fetchimgt)

Process completed with exit code 1.

Run workflow test with different profiles (22.10.1, test_tcr)

Process completed with exit code 1.

Run workflow test with different profiles (latest-everything, test_tcr)

Process completed with exit code 1.

Run workflow test with different profiles (latest-everything, test_fetchimgt)

There are over 10,000 files in this artifact, consider creating an archive before upload to improve the upload performance.

Run workflow test with different profiles (22.10.1, test_fetchimgt)

There are over 10,000 files in this artifact, consider creating an archive before upload to improve the upload performance.

Artifacts

Produced during runtime

Name	Size
logs-test_assembled_hs Expired	183 MB
logs-test_assembled_mm Expired	234 MB
logs-test_fetchimgt Expired	1.1 GB
logs-test_no_umi Expired	184 MB
logs-test_nocluster Expired	969 MB
logs-test_tcr Expired	8.86 GB