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Error with POD5 filter #142

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lucacozzuto opened this issue Aug 26, 2024 · 2 comments · May be fixed by #143
Open

Error with POD5 filter #142

lucacozzuto opened this issue Aug 26, 2024 · 2 comments · May be fixed by #143

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@lucacozzuto
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Dear developers,
I'm trying to use pod5 filter but I got this error:

pod5 subset test.pod5 -t 1 --summary tes.files --columns barcode --output barcode_subset  

POD5 has encountered an error: 'read_csv() got an unexpected keyword argument 'comment_char''

Not so sure which is the problem.

Thanks in advance for your help.

  • Pod5 Version: 0.3.15
  • Python Version: 3.11.1
  • Platform: almalinux
@JudoWill
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I'm getting the same issue on my box that requires polars-lts-cpu but it works fine on the one that uses the standard polars. @lucacozzuto are you using the lts version too?

@lucacozzuto
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I took it straight from bioconda. The version 0.2.4 seems to work instead.

@JudoWill JudoWill linked a pull request Aug 29, 2024 that will close this issue
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@JudoWill @lucacozzuto and others