otf2, cubelib, cubew (and formly opari2) need patching to build on spock/Cray Shasta.
Add platform-{backend,frontend,mpi,shmem}-user-provided config files to build
dir, edit to set compilers to cray wrapper and patch configure (maybe at the
pre-autoreconf level via build-config/common/m4/ac_scorep_sys_detection.m4
lines 118-122) from
[test -L /opt/cray/pe/pmi/default],
[AS_IF([test -d /opt/cray/ari/modulefiles],
[ac_scorep_platform="crayxc"])],
[AS_IF([test "x${ac_scorep_platform}" = "x"],
[ac_scorep_platform="linux"])])
elif test -L /opt/cray/pe/pmi/default; then :
if test -d /opt/cray/ari/modulefiles; then :
ac_scorep_platform="crayxc"
fi
to
elif test -L /opt/cray/pe/pmi/default; then :
if test -d /opt/cray/ari/modulefiles; then :
ac_scorep_platform="crayxc"
else
ac_scorep_platform="linux"
fi
and let the script think it's on a vanilla linux cluster.
- Specs for large
defnitions:sets of target applications that should be built with each compiler should be expressed as a separate matrix for each compiler class to more easily exclude problem builds and include more verbose exceptional specs near the block in which packages are handled for a given class of toolchain. IE:is better than:- matrix: - - $general_compute_packages - - $gcc_compilers exclude: - 'amgx%gcc@9:' - hpx %[email protected] cxxstd=14 ^[email protected] - hpx %[email protected] cxxstd=17 ^[email protected] - matrix: - - $general_compute_packages - - $llvm_compilers - - arch=linux-rhel7-power9le - - ^elfutils%[email protected] arch=linux-rhel7-power8le - matrix: - - $general_compute_packages - - $xl_compilers - - arch=linux-rhel7-power9le - - ^numactl%[email protected] arch=linux-rhel7-power8le exclude: - [email protected]:%xlThis way, specs for a given package that needs to be done differently for each toolchain are not widely spread out across the manifest. This also allows deployment of the whole stack for compiler classes that can do all the builds reliably sooner than the tricky edge cases. Ie, we'll always have at least one compiler environment that has everything.- matrix: - - $general_compute_packages - - $all_compilers exclude: # lots of exceptions and separate matrixes for problem builds.
- Changes to a preferred package version in an environment does not get applied
when concretizing matrix specs without
spack concretize -f.
-
rdma-core with intel compilers: The path set via
buildlib/config.h.infor#define ACM_CONF_DIR "@CMAKE_INSTALL_FULL_SYSCONFDIR@/rdma"can be exceptionally long under spack. For example, in fileibacm/prov/acmp/src/acmp.c, the line (274)static char route_data_file[128] = ACM_CONF_DIR "/ibacm_route.data";sets a string 134+ characters long (ielen("/sw/andes/spack-envs/base/opt/linux-rhel8-x86_64/clang-9.0.1/rdma-core-28.0-2ixcucck7eb4fzbd3t6imjrhz5qahxui/etc/rdma/ibacm_route.data")).This causes the intel comppilers to choke when trying to shove that string into a 128-character array. Patching the source code to allow for a path up to 192 characters in length lets the build succeed, but I do not know if this breaks other things.
-
AOCC 2.2.0 (and possibly earlier) has issues with OMP and some expected GCC math libraries if using the build of flang provided by the module when building with spack. For example, building HDF5:
/autofs/nccs-svm1_sw/.testing/belhorn/spack/facility-spack/spack/lib/spack/env/clang/flang -I. -I../../src -I../../fortran/src -I../../fortran/src -I../../fortran/src -fPIC -c -o fortranlib_test.o fortranlib_test.F90 FCLD fortranlib_test ld.lld: error: undefined symbol: fabsq >>> referenced by tf_gen.F90:172 >>> tf_gen.o:(th5_misc_gen_real_eq_kind_16_) in archive ./.libs/libh5test_fortran.a >>> referenced by tf_gen.F90:172 >>> tf_gen.o:(th5_misc_gen_real_eq_kind_16_) in archive ./.libs/libh5test_fortran.a >>> referenced by tf_gen.F90:172 >>> tf_gen.o:(th5_misc_gen_real_eq_kind_16_) in archive ./.libs/libh5test_fortran.a >>> did you mean: fabsf >>> defined in: /lib64/libm.so.6 ld.lld: error: undefined symbol: fmaxq >>> referenced by tf_gen.F90:172 >>> tf_gen.o:(th5_misc_gen_real_eq_kind_16_) in archive ./.libs/libh5test_fortran.a clang-10: error: linker command failed with exit code 1 (use -v to see invocation) make[2]: *** [Makefile:931: fortranlib_test] Error 1 make[2]: Leaving directory '/run/user/12126/belhorn/spack-stage-hdf5-1.10.6-gt27bq6cih6futelz3i3tekfwylx52t7/spack-src/fortran/test' make[1]: *** [Makefile:820: all-recursive] Error 1 make[1]: Leaving directory '/run/user/12126/belhorn/spack-stage-hdf5-1.10.6-gt27bq6cih6futelz3i3tekfwylx52t7/spack-src/fortran' make: *** [Makefile:660: all-recursive] Error 1 -
mfem fails to build due to following error in simple build case:
==> Error: Failed to install mfem due to ChildError: ProcessError: Command exited with status 2:
'make' '-j16' 'lib'
1 error found in build log:
106 /sw/andes/spack-envs/base/opt/linux-rhel8-x86_64/gcc-8.3.1/openmpi-4.0.4-wfz3nk67jzegocblvwhtmqjjqel
ridk5/bin/mpic++ -O3 -std=c++11 -I/sw/andes/spack-envs/base/opt/linux-rhel8-x86_64/gcc-8.3.1/hypre
-2.18.0-bammqydlgzcntddviulb6ndoixfwyg4h/include -I/sw/andes/spack-envs/base/opt/linux-rhel8-x86_64/
gcc-8.3.1/metis-5.1.0-ahuci2nwesonop73arnq5uzvsyxnwsy4/include -I/sw/andes/spack-envs/base/opt/linux
-rhel8-x86_64/gcc-8.3.1/zlib-1.2.11-xqjeqtupcfqqqlaw5ehjlfjjly7zoe3b/include -c linalg/sundials.cpp
-o linalg/sundials.o
107 /sw/andes/spack-envs/base/opt/linux-rhel8-x86_64/gcc-8.3.1/openmpi-4.0.4-wfz3nk67jzegocblvwhtmqjjqel
ridk5/bin/mpic++ -O3 -std=c++11 -I/sw/andes/spack-envs/base/opt/linux-rhel8-x86_64/gcc-8.3.1/hypre
-2.18.0-bammqydlgzcntddviulb6ndoixfwyg4h/include -I/sw/andes/spack-envs/base/opt/linux-rhel8-x86_64/
gcc-8.3.1/metis-5.1.0-ahuci2nwesonop73arnq5uzvsyxnwsy4/include -I/sw/andes/spack-envs/base/opt/linux
-rhel8-x86_64/gcc-8.3.1/zlib-1.2.11-xqjeqtupcfqqqlaw5ehjlfjjly7zoe3b/include -c linalg/ode.cpp -o l
inalg/ode.o
108 /sw/andes/spack-envs/base/opt/linux-rhel8-x86_64/gcc-8.3.1/openmpi-4.0.4-wfz3nk67jzegocblvwhtmqjjqel
ridk5/bin/mpic++ -O3 -std=c++11 -I/sw/andes/spack-envs/base/opt/linux-rhel8-x86_64/gcc-8.3.1/hypre
-2.18.0-bammqydlgzcntddviulb6ndoixfwyg4h/include -I/sw/andes/spack-envs/base/opt/linux-rhel8-x86_64/
gcc-8.3.1/metis-5.1.0-ahuci2nwesonop73arnq5uzvsyxnwsy4/include -I/sw/andes/spack-envs/base/opt/linux
-rhel8-x86_64/gcc-8.3.1/zlib-1.2.11-xqjeqtupcfqqqlaw5ehjlfjjly7zoe3b/include -c linalg/hiop.cpp -o
linalg/hiop.o
109 /sw/andes/spack-envs/base/opt/linux-rhel8-x86_64/gcc-8.3.1/openmpi-4.0.4-wfz3nk67jzegocblvwhtmqjjqel
ridk5/bin/mpic++ -O3 -std=c++11 -I/sw/andes/spack-envs/base/opt/linux-rhel8-x86_64/gcc-8.3.1/hypre
-2.18.0-bammqydlgzcntddviulb6ndoixfwyg4h/include -I/sw/andes/spack-envs/base/opt/linux-rhel8-x86_64/
gcc-8.3.1/metis-5.1.0-ahuci2nwesonop73arnq5uzvsyxnwsy4/include -I/sw/andes/spack-envs/base/opt/linux
-rhel8-x86_64/gcc-8.3.1/zlib-1.2.11-xqjeqtupcfqqqlaw5ehjlfjjly7zoe3b/include -c linalg/superlu.cpp
-o linalg/superlu.o
110 /sw/andes/spack-envs/base/opt/linux-rhel8-x86_64/gcc-8.3.1/openmpi-4.0.4-wfz3nk67jzegocblvwhtmqjjqel
ridk5/bin/mpic++ -O3 -std=c++11 -I/sw/andes/spack-envs/base/opt/linux-rhel8-x86_64/gcc-8.3.1/hypre
-2.18.0-bammqydlgzcntddviulb6ndoixfwyg4h/include -I/sw/andes/spack-envs/base/opt/linux-rhel8-x86_64/
gcc-8.3.1/metis-5.1.0-ahuci2nwesonop73arnq5uzvsyxnwsy4/include -I/sw/andes/spack-envs/base/opt/linux
-rhel8-x86_64/gcc-8.3.1/zlib-1.2.11-xqjeqtupcfqqqlaw5ehjlfjjly7zoe3b/include -c linalg/solvers.cpp
-o linalg/solvers.o
111 linalg/hypre.cpp: In copy constructor 'mfem::HypreParMatrix::HypreParMatrix(const mfem::HypreParMatr
ix&)':
>> 112 linalg/hypre.cpp:822:8: error: 'hypre_ParCSRMatrixCompleteClone' was not declared in this scope
113 A = hypre_ParCSRMatrixCompleteClone(Ph);
114 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
115 linalg/hypre.cpp:822:8: note: suggested alternative: 'hypre_ParCSRMatrixClone'
116 A = hypre_ParCSRMatrixCompleteClone(Ph);
117 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
118 hypre_ParCSRMatrixClone
- [email protected]%[email protected] on peak:
__ieee128C++ error. - papi: filter_file over
**/*.[ch]hangs on random files. netcdf-fortran%xl: libtool calls do not include-Larguments forSpec('netcdf)['hdf5']libraries despite those paths being inSPACK_LINK_DIRSandSPACK_RPATH_DIRS- Solution(?): enforce hdf5 dependency when building with xl?
- Using generic full anaconda installation to provide base python exposes
unwanted tools from anaconda distro. For example:
/sw/peak/python/3.7/anaconda3/5.3.0/bin/fc-cache /sw/.b2/envs/peak/base/opt/linux-rhel7-power8le/gcc-4.8.5/font-util-1.3.2-tdhbdp4kjq2rxokfsfn6giwzsr42greu/share/fonts/X11/cyrillic - Linking against ZFP built with GCC >=6.4.0 fails to find the right libstdc++; probably a library search error when building zfp?
In spectrum-mpi-10.3.1.2-20200121-*/include/mpi.h:268:
#if (1 == SMPI_HAVE_PRAGMA_WEAK)
/*
* test_version() is put into user's object files as
* a weak symbol, so users can use a utility such as
* strings to see what SMPI version it was built with.
*/
#if defined(c_plusplus) || defined(__cplusplus)
extern "C"
{
#endif
#pragma weak smpi_built_against_version
OMPI_DECLSPEC const char * smpi_built_against_version(void);
OMPI_DECLSPEC const char * smpi_built_against_version(void) { return "SMPI_BUILT_AGAINST_VERSION=" SMPI_VERSION_STR; }
#if defined(c_plusplus) || defined(__cplusplus)
} /* extern "C" */
#endif
#endiffirst declaration of OMPI_DECLSPEC const char * smpi_built_against_version(void); is redundant and problematic.
-
Unregistering packages from spack DB in an environment?
-
Uninstalling package from env without removing it from env SpecList
- No way to current remove specs expanded from a matrix, but sometimes there is a need to be rebuild such packages (along with their dependents).
- Often want to remove modules for such packages as well, especially if module is initially for an "external" build.
- Generally do not wish to change the spec list, just remove the old builds and modules.
-
Matrix stacks of conflict builds should warn that a spec conflicts with a compiler but continue concretizing the env with allowed specs. For example, the following error should not be fatal:
==> Error: Conflicts in concretized spec "[email protected]%[email protected] build_type=RelWithDebInfo ~cuda+openmp arch=linux-rhel7-power8le/xymlav5" List of matching conflicts for spec: [email protected]%[email protected] build_type=RelWithDebInfo ~cuda+openmp arch=linux-rhel7-power8le ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt arch=linux-rhel7-power8le ^[email protected]%[email protected]~symlinks~termlib arch=linux-rhel7-power8le ^[email protected]%[email protected] arch=linux-rhel7-power8le ^[email protected]%[email protected]+systemcerts arch=linux-rhel7-power8le 1. "%gcc@:4.999" conflicts with "[email protected]:"for the matrix:
- definitions: - gcc_compilers: - '%[email protected]' - '%[email protected]' - manifest: - matrix: - - raja - - $gcc_compilers -
Cannot
spack findone-off specs, notably built with CLI cflags and fflags arguments.spec -lINtshows them as installed, butfindwith either a hash argument or partial spec fails to find them.
-
blacklist_implicits: Truefails to publish any modulefiles for LMOD. -
deleted environment, but not lock file:
$ spack -v -d find ==> [2020-02-03-10:30:13.053760] Imported find from built-in commands ==> [2020-02-03-10:30:13.054995] Imported find from built-in commands ==> [2020-02-03-10:30:13.055733] Reading config file /autofs/nccs-svm1_sw/.testing/belhorn/spack/site-stacks/hosts/peak/spack/var/spack/environments/test/spack.yaml Traceback (most recent call last): File "/autofs/nccs-svm1_sw/.testing/belhorn/spack/site-stacks/hosts/peak/spack/bin/spack", line 64, in <module> sys.exit(spack.main.main()) File "/autofs/nccs-svm1_sw/.testing/belhorn/spack/site-stacks/hosts/peak/spack/lib/spack/spack/main.py", line 752, in main return _invoke_command(command, parser, args, unknown) File "/autofs/nccs-svm1_sw/.testing/belhorn/spack/site-stacks/hosts/peak/spack/lib/spack/spack/main.py", line 486, in _invoke_command return_val = command(parser, args) File "/autofs/nccs-svm1_sw/.testing/belhorn/spack/site-stacks/hosts/peak/spack/lib/spack/spack/cmd/find.py", line 203, in find results = args.specs(**q_args) File "/autofs/nccs-svm1_sw/.testing/belhorn/spack/site-stacks/hosts/peak/spack/lib/spack/spack/cmd/common/arguments.py", line 75, in _specs kwargs['hashes'] = set(env.all_hashes()) File "/autofs/nccs-svm1_sw/.testing/belhorn/spack/site-stacks/hosts/peak/spack/lib/spack/spack/environment.py", line 1232, in all_hashes return list(self.all_specs_by_hash().keys()) File "/autofs/nccs-svm1_sw/.testing/belhorn/spack/site-stacks/hosts/peak/spack/lib/spack/spack/environment.py", line 1221, in all_specs_by_hash specs = self.specs_by_hash[h].traverse(deptype=('link', 'run')) KeyError: 'gdd24gc5segaupqphgmu5bky4n4jxlai' $ grep gdd24gc5segaupqphgmu5bky4n4jxlai hosts/peak/spack/var/spack/environments/test/spack.lock "hash": "gdd24gc5segaupqphgmu5bky4n4jxlai", "gdd24gc5segaupqphgmu5bky4n4jxlai": { "hash": "gdd24gc5segaupqphgmu5bky4n4jxlai", "hash": "gdd24gc5segaupqphgmu5bky4n4jxlai", -
package default variants do not pass thorugh environment concretization as expected. For example,
pythonby default does not build with libxml2 support and requestsgettext~libxml2as a dependency. Gettext has+libxml2by default. The resulting error is:$ spack concretize # .... ==> Error: An unsatisfiable variant constraint has been detected for spec: [email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-power8le ^[email protected]%[email protected]+shared arch=linux-rhel7-power8le ^[email protected]%[email protected] arch=linux-rhel7-power8le ^[email protected]%[email protected] arch=linux-rhel7-power8le ^[email protected]%[email protected]~python arch=linux-rhel7-power8le ^[email protected]%[email protected] arch=linux-rhel7-power8le ^[email protected]%[email protected] arch=linux-rhel7-power8le ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-power8le ^[email protected]%[email protected]~symlinks~termlib arch=linux-rhel7-power8le ^[email protected]%[email protected] arch=linux-rhel7-power8le while trying to concretize the partial spec: [email protected]%[email protected]+bz2+ctypes+dbm~debug~libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4~uuid+zlib arch=linux-rhel7-power8le ^[email protected]%[email protected] arch=linux-rhel7-power8le python requires gettext variant ~libxml2, but spec asked for +libxml2However, classical spec concretization still works:
$ spack spec "[email protected]%[email protected]+bz2+ctypes+dbm~debug~libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4~uuid+zlib arch=linux-rhel7-power8le" Input spec -------------------------------- [email protected]%[email protected]+bz2+ctypes+dbm~debug~libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4~uuid+zlib arch=linux-rhel7-power8le Concretized -------------------------------- ==> Warning: Using GCC 4.8 to optimize for Power 8 might not work if you are not on Red Hat Enterprise Linux 7, where a custom backport of the feature has been done. Upstream support from GCC starts in version 4.9 [email protected]%[email protected]+bz2+ctypes+dbm~debug~libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4~uuid+zlib arch=linux-rhel7-power8le ^[email protected]%[email protected]+shared arch=linux-rhel7-power8le ^[email protected]%[email protected] arch=linux-rhel7-power8le ^[email protected]%[email protected] arch=linux-rhel7-power8le ^[email protected]%[email protected]+libbsd arch=linux-rhel7-power8le ^[email protected]%[email protected] arch=linux-rhel7-power8le ^[email protected]%[email protected] arch=linux-rhel7-power8le ^[email protected]%[email protected] arch=linux-rhel7-power8le ^[email protected]%[email protected]~symlinks~termlib arch=linux-rhel7-power8le ^[email protected]%[email protected] arch=linux-rhel7-power8le ^[email protected]%[email protected]+bzip2+curses+git~libunistring~libxml2+tar+xz arch=linux-rhel7-power8le ^[email protected]%[email protected] arch=linux-rhel7-power8le ^[email protected]%[email protected] arch=linux-rhel7-power8le ^[email protected]%[email protected] arch=linux-rhel7-power8le ^[email protected]%[email protected]+systemcerts arch=linux-rhel7-power8le ^[email protected]%[email protected]~column_metadata+fts~functions~rtree arch=linux-rhel7-power8le ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-power8le -
Fallback target microarchitecture should be most generic instead of most specific possible:
Warning: [email protected] cannot build optimized binaries for "power9le". Using best target possible: "power8le"I'd rather have this fallback to
ppc64le. Setting package defaults inspack.yamlto:packages: # General Settings all: compiler: [[email protected], gcc, clang, xl, pgi] providers: mpi: [olcf.spectrum-mpi] lapack: [netlib-lapack] blas: [netlib-lapack] scalapack: [netlib-scalapack] buildable: true version: [] target: ['power9le', 'ppc64le'] paths: {} modules: {}does not concretize specs incapabable of targetting
power9leasppc64le, but does the default behavior described at the top of this issue. Even putting thearchtarget in the compiler spec or as a separate vector in an environmnent/stack matrix outer-product fails to propogate the requested target to specs. -
spack clean -sin an environment doesn't seem to actually clear the staging directories? -
Lost packages? CMake for XL is installed in 'None':
$ spack install -v ==> Installing environment test ==> [email protected] : has external module in cmake ==> [email protected] : is actually installed in None ==> [email protected] : already registered in DB ==> Installing netlib-lapack ==> Searching for binary cache of netlib-lapack ==> Finding buildcaches in /sw/sources/spack/mirrors/builds/peak/build_cache ==> Fetching file:///sw/sources/spack/mirrors/builds/peak/build_cache/linux-rhel7-power9le-xl-16.1.1-4-netlib-lapack-3.8.0-ej4quc7ch3dovus2mkgu7wqxwzyns52v.spec.yaml curl: (37) Couldn't open file /sw/sources/spack/mirrors/builds/peak/build_cache/linux-rhel7-power9le-xl-16.1.1-4-netlib-lapack-3.8.0-ej4quc7ch3dovus2mkgu7wqxwzyns52v.spec.yaml ==> Failed to fetch file from URL: file:///sw/sources/spack/mirrors/builds/peak/build_cache/linux-rhel7-power9le-xl-16.1.1-4-netlib-lapack-3.8.0-ej4quc7ch3dovus2mkgu7wqxwzyns52v.spec.yaml Curl failed with error 37 ==> Fetching from file:///sw/sources/spack/mirrors/builds/peak/build_cache/linux-rhel7-power9le-xl-16.1.1-4-netlib-lapack-3.8.0-ej4quc7ch3dovus2mkgu7wqxwzyns52v.spec.yaml failed. ==> No binary for netlib-lapack found: installing from source ==> Using cached archive: /sw/.testing/belhorn/spack/site-stacks/hosts/peak/var/cache/netlib-lapack/netlib-lapack-3.8.0.tar.gz ==> Staging archive: /tmp/belhorn/spack-stage/spack-stage-netlib-lapack-3.8.0-ej4quc7ch3dovus2mkgu7wqxwzyns52v/lapack-3.8.0.tar.gz ==> Created stage in /tmp/belhorn/spack-stage/spack-stage-netlib-lapack-3.8.0-ej4quc7ch3dovus2mkgu7wqxwzyns52v ==> Applied patch /autofs/nccs-svm1_sw/.testing/belhorn/spack/site-stacks/hosts/peak/spack/var/spack/repos/builtin/packages/netlib-lapack/ibm-xl.patch ==> Applied patch /autofs/nccs-svm1_sw/.testing/belhorn/spack/site-stacks/hosts/peak/spack/var/spack/repos/builtin/packages/netlib-lapack/undefined_declarations.patch ==> Applied patch /autofs/nccs-svm1_sw/.testing/belhorn/spack/site-stacks/hosts/peak/spack/var/spack/repos/builtin/packages/netlib-lapack/testing.patch ==> Ran patch() for netlib-lapack ==> Building netlib-lapack [CMakePackage] ==> Executing phase: 'cmake' ==> [2020-02-04-10:26:41.375818] 'cmake' '/tmp/belhorn/spack-stage/spack-stage-netlib-lapack-3.8.0-ej4quc7ch3dovus2mkgu7wqxwzyns52v/spack-src' '-G' 'Unix Makefiles' '-DCMAKE_INSTALL_PREFIX:PATH=/gpfs/alpine/world-shared/stf007/belhorn/spac k/stacks/peak/production/opt/linux-rhel7-power9le/xl-16.1.1-4/netlib-lapack-3.8.0-ej4quc7ch3dovus2mkgu7wqxwzyns52v' '-DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo' '-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON' '-DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=FAL SE' '-DCMAKE_INSTALL_RPATH:STRING=/gpfs/alpine/world-shared/stf007/belhorn/spack/stacks/peak/production/opt/linux-rhel7-power9le/xl-16.1.1-4/netlib-lapack-3.8.0-ej4quc7ch3dovus2mkgu7wqxwzyns52v/lib;/gpfs/alpine/world-shared/stf007/belhorn/ spack/stacks/peak/production/opt/linux-rhel7-power9le/xl-16.1.1-4/netlib-lapack-3.8.0-ej4quc7ch3dovus2mkgu7wqxwzyns52v/lib64' '-DCMAKE_PREFIX_PATH:STRING=None' '-DBUILD_SHARED_LIBS:BOOL=OFF' '-DLAPACKE:BOOL=ON' '-DLAPACKE_WITH_TMG:BOOL=ON' '-DCBLAS=ON' '-DCMAKE_Fortran_COMPILER=/sw/peak/xl/16.1.1-4/xlf/16.1.1/bin/xlf_r' '-DCMAKE_Fortran_FLAGS= -O3 -qnohot' '-DBUILD_DEPRECATED:BOOL=ON' '-DBUILD_TESTING:BOOL=OFF' ==> Error: ProcessError: cmake: No such file or directory: 'cmake' Command: 'cmake' '/tmp/belhorn/spack-stage/spack-stage-netlib-lapack-3.8.0-ej4quc7ch3dovus2mkgu7wqxwzyns52v/spack-src' '-G' 'Unix Makefiles' '-DCMAKE_INSTALL_PREFIX:PATH=/gpfs/alpine/world-shared/stf007/belhorn/spack/stacks/peak/produc tion/opt/linux-rhel7-power9le/xl-16.1.1-4/netlib-lapack-3.8.0-ej4quc7ch3dovus2mkgu7wqxwzyns52v' '-DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo' '-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON' '-DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=FALSE' '-DCMAKE_INSTALL _RPATH:STRING=/gpfs/alpine/world-shared/stf007/belhorn/spack/stacks/peak/production/opt/linux-rhel7-power9le/xl-16.1.1-4/netlib-lapack-3.8.0-ej4quc7ch3dovus2mkgu7wqxwzyns52v/lib;/gpfs/alpine/world-shared/stf007/belhorn/spack/stacks/peak/pr oduction/opt/linux-rhel7-power9le/xl-16.1.1-4/netlib-lapack-3.8.0-ej4quc7ch3dovus2mkgu7wqxwzyns52v/lib64' '-DCMAKE_PREFIX_PATH:STRING=None' '-DBUILD_SHARED_LIBS:BOOL=OFF' '-DLAPACKE:BOOL=ON' '-DLAPACKE_WITH_TMG:BOOL=ON' '-DCBLAS=ON' '-DCMA KE_Fortran_COMPILER=/sw/peak/xl/16.1.1-4/xlf/16.1.1/bin/xlf_r' '-DCMAKE_Fortran_FLAGS= -O3 -qnohot' '-DBUILD_DEPRECATED:BOOL=ON' '-DBUILD_TESTING:BOOL=OFF' See build log for details: /tmp/belhorn/spack-stage/spack-stage-netlib-lapack-3.8.0-ej4quc7ch3dovus2mkgu7wqxwzyns52v/spack-build-out.txt -
Autoconf _make_exectuable does not honor external module-based installs or concretization through externals picks up the incorrect version
def _make_executable(self, name): return Executable(join_path(self.prefix.bin, name))
$ spack spec -lINt "parallel-io%[email protected]"
Input spec
--------------------------------
- [ ] .parallel-io%[email protected]
Concretized
--------------------------------
- inp6ftz [ ] [email protected]%[email protected] build_type=RelWithDebInfo ~examples arch=linux-rhel7-power9le
- laisp5g [b ] ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt arch=linux-rhel7-power9le
- qryybog [bl ] ^[email protected]%[email protected]~cxx~debug+fortran+hl+mpi+pic+shared~szip~threadsafe arch=linux-rhel7-power9le
- s2uo2br [bl ] ^[email protected]%[email protected] arch=linux-rhel7-power9le
- qkkibm2 [b ] ^[email protected]%[email protected] arch=linux-rhel7-power9le
- 7sy5q7a [b ] ^[email protected]%[email protected] arch=linux-rhel7-power9le
[+] b55sxnw [b ] ^[email protected]%[email protected] arch=linux-rhel7-power9le
[+] 6djryqh [b ] ^[email protected]%[email protected] patches=3877ab548f88597ab2327a2230ee048d2d07ace1062efe81fc92e91b7f39cd00,fc9b61654a3ba1a8d6cd78ce087e7c96366c290bc8d2c299f09828d793b853c8 +sigsegv arch=linux-rhel7-power9le
[+] lqvz5ns [bl ] ^[email protected]%[email protected] arch=linux-rhel7-power9le
[+] 3y2htop [bl ] ^[email protected]%[email protected] arch=linux-rhel7-power9le
[+] rsnev7o [bl ] ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-power9le
- 2eob7sc [bl ] ^[email protected]%[email protected]~dap~hdf4 maxdims=1024 maxvars=8192 +mpi+parallel-netcdf+pic+shared arch=linux-rhel7-power9le
[+] rjst2ob [bl ] ^[email protected]%[email protected]+cxx+fortran+pic arch=linux-rhel7-power9le
- k37xmd4 [bl ] ^[email protected]%[email protected]+mpi+pic arch=linux-rhel7-power9le