Turn off logging info

[erolkavvas]

Hi!

I was wondering if there was a way to turn off the logging outputs from micom?

Example of logging output below,

INFO:micom:setting new abundances for None
INFO:micom:setting new abundances for None
INFO:micom:adjusting abundances for Index([], dtype='object', name='id') to 1e-06
INFO:micom:adjusting abundances for Index([], dtype='object', name='id') to 1e-06

I've tried the following but it hasnt worked,

from micom import logger
logger.propagate = False
logger.logging.disabled = True
logger.logging.basicConfig(level=logger.logging.CRITICAL)

Thanks,
Erol

[cdiener]

It's disabled by default, are you importing another package that changes the logging level? Either way, your solution was almost there but you need to set the attributes on the logger and not the module, so on micom.logger.logger not on micom.logger.

Example:

In [1]: import micom as mm

In [2]: mm.logger.logger.setLevel("INFO")

In [3]: com = mm.Community(mm.data.test_taxonomy())
[13:45:14] INFO     building new micom model None.                                                                                                            community.py:135
           INFO     using the cplex solver.                                                                                                                   community.py:142
           INFO     0 individuals with abundances below threshold                                                                                             community.py:161
...
           INFO     updating import rate for external metabolite pi_m                                                                                         community.py:373
           INFO     updating import rate for external metabolite pyr_m                                                                                        community.py:373
           INFO     updating import rate for external metabolite succ_m                                                                                       community.py:373
Building ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 0:00:00

In [4]: mm.logger.logger.disabled = True

In [5]: com = mm.Community(mm.data.test_taxonomy())
Building ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 0:00:00

[erolkavvas]

It's probably another package like you said. That works, thank you!