-
Notifications
You must be signed in to change notification settings - Fork 2
/
DESCRIPTION
106 lines (106 loc) · 2.7 KB
/
DESCRIPTION
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
Package: dpcR
Type: Package
Title: Digital PCR Analysis
Version: 0.5.1-1
LazyData: true
Date: 202-11-07
Authors@R: c(
person("Michal", "Burdukiewicz", email = "[email protected]",
role = c("cre", "aut"), comment = c(ORCID = "0000-0001-8926-582X")),
person("Stefan", "Roediger", email = "[email protected]", role = "aut",
comment = c(ORCID = "0000-0002-1441-6512")),
person("Bart", "Jacobs", email = "[email protected]", role = "aut"),
person("Piotr", "Sobczyk", email = "[email protected]", role = "ctb"),
person("Andrej-Nikolai", "Spiess", email = "[email protected]", role = "ctb"))
Description: Analysis, visualisation and simulation of digital polymerase chain
reaction (dPCR) (Burdukiewicz et al. (2016) <doi:10.1016/j.bdq.2016.06.004>).
Supports data formats of commercial systems (Bio-Rad QX100 and
QX200; Fluidigm BioMark) and other systems.
License: GPL-3
URL: https://github.com/michbur/dpcR
BugReports: https://github.com/michbur/dpcR/issues
Depends: R (>= 3.0.0), methods
Imports: binom, chipPCR, e1071, evd, dgof, multcomp, qpcR, pracma,
rateratio.test, readxl, signal, shiny, spatstat.core, spatstat.geom
Suggests:
digest,
DT,
ggplot2,
knitr,
markdown,
rhandsontable,
rmarkdown,
shinythemes,
xtable
VignetteBuilder: knitr
Packaged: 2019-01-26 12:20:06 UTC; ans
NeedsCompilation: no
Encoding: UTF-8
RoxygenNote: 7.2.1
Maintainer: Michal Burdukiewicz <[email protected]>
Collate:
'AUCtest.R'
'BioradCNV.R'
'White.R'
'adpcr2panel.R'
'adpcr2ppp.R'
'binarize.R'
'classes.R'
'bind_dpcr.R'
'bioamp.R'
'calc_breaks.R'
'calc_coordinates.R'
'calc_lambda.R'
'compare_dens.R'
'count_test-class.R'
'create_dpcr.R'
'dPCRmethyl.R'
'ddpcRquant.R'
'df2dpcr.R'
'dpcR-package.R'
'dpcReport_gui.R'
'dpcr2df.R'
'dpcr_calculator.R'
'dpcr_density.R'
'dpcr_density_gui.R'
'dpcr_density_table.R'
'extract_run.R'
'fit_adpcr.R'
'fl.R'
'get_k_n.R'
'hsm.R'
'limit_cq.R'
'many_peaks.R'
'modlist.R'
'moments.R'
'num2int.R'
'pds.R'
'pds_raw.R'
'plot_distr.R'
'plot_panel.R'
'plot_vf_circ.R'
'plot_vic_fam.R'
'print_summary.R'
'qdpcr.R'
'qpcr2pp.R'
'qpcr_analyser.R'
'read_amp.R'
'read_dpcr.R'
'rename_dpcr.R'
'rtadpcr.R'
'safe_efficiency.R'
'show_dpcr.R'
'sim_adpcr.R'
'sim_ddpcr_bkm.R'
'sim_dpcr.R'
'simulations.R'
'six_panels.R'
'summary_dpcr.R'
'test_counts.R'
'test_counts_gui.R'
'test_panel.R'
'test_peaks.R'
'test_pooled.R'
'valid_amp.R'
'y_val_conf.R'
Config/testthat/edition: 3