diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 3c1ed6f..859e5ce 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -33,12 +33,10 @@ jobs: #cache-env: true - name: MicromambaActivateEnv run: micromamba activate Rseurat - - name: RemoteInstallGH + - name: InstallSeuratDatasets run: | - apt update && apt install -y libicu-dev libicu58 - Rscript -e "remotes::install_github('satijalab/seurat-data')" - Rscript -e "SeuratData::InstallData('ifnb')" # if this fails, download file.tar.gz w/ cURL, then install.packages('file.tar.gz', repos=NULL, type='source') - Rscript -e "SeuratData::InstallData('pbmc3k')" + Rscript -e "install.packages(pkgs='ifnb.SeuratData', repos='https://seurat.nygenome.org/', type='source')" + Rscript -e "install.packages(pkgs='pbmc3k.SeuratData', repos='https://seurat.nygenome.org/', type='source')" - name: DownloadZenodo working-directory: ./rmd run: |