0.4.0

What's Changed

• Breaking changes list: #461
• September cleaning 1 by @cthoyt in #413
• Standardize usage of oboInOwl data by @cthoyt in #414
• Refactor SPARQL utilities to use curies.Converter by @cthoyt in #415
• Add converter to MappingSetDocument and MappingSetDataFrame by @cthoyt in #417
• Update testing and type checking by @cthoyt in #418
• Better handle URI fields when getting prefixes from metadata by @cthoyt in #420
• Use curies.Converter in OntoPortal exporter by @cthoyt in #416
• Use curies.Converter in Metadata object by @cthoyt in #421
• Fix ORCID URI prefixes in test data by @cthoyt in #423
• Improve MSDF instantiation and context functions by @cthoyt in #422
• Update context loading by @cthoyt in #425
• Remove needless output during tests by @cthoyt in #428
• Re-implement reconciliation code with curies by @cthoyt in #426
• Switch MSDF to use curies.Converter natively by @cthoyt in #430
• Simplify parsing SSSOM w/ curies.chain by @cthoyt in #431
• Explicitly use Python engine for pandas by @cthoyt in #435
• Cache schema object by @cthoyt in #443
• Standardize MSDF by @cthoyt in #438
• Be less draconian on alignment api parsing by @matentzn in #437
• Make MSDF with default converter by @cthoyt in #444
• Get MSDF from LinkML objects by @cthoyt in #440
• Remove "None" checks for df and metadata by @cthoyt in #442
• Rename type hint for Converters by @cthoyt in #445
• Remove duplicate definition of schema constant by @cthoyt in #446
• Test old versions of Pandas by @hrshdhgd in #433
• Refactor SSSOM Schema usage by @cthoyt in #449
• Refactor mapping code by @cthoyt in #450
• Added setuptools install to poetry and latest version of poetry by @hrshdhgd in #451
• Consolidate mapping metadata setting by @cthoyt in #455
• Refactor _extract_global_metadata() by @cthoyt in #452
• Directly unpack metadata tuple by @cthoyt in #453
• Cleanup Metadata usages by @cthoyt in #447
• Improve CURIE and IRI validation by @cthoyt in #459
• Update type hints for prefix map merging by @cthoyt in #454
• Clean up extract_iri functionality by @cthoyt in #460
• Upstream processing ambiguous URI or CURIE by @cthoyt in #463
• Update SSSOM Extended Prefix Map by @github-actions in #466
• Fix test after EPM update by @matentzn in #468
• Optimization of some functions by @hrshdhgd in #462
• Reduce three dependencies by @cthoyt in #467
• Update SSSOM Extended Prefix Map by @github-actions in #470
• Use converter during obographs parsing instead of hardcode oboInOwl:hasDbXref by @hrshdhgd in #472
• Refactor OBO Graph JSON parser by @cthoyt in #474
• Update SSSOM Extended Prefix Map by @github-actions in #475
• What to do when having a uri-prefix clash? by @matentzn in #473

New Contributors

• @github-actions made their first contribution in #466

Full Changelog: v0.3.41...0.4.0

v0.4.0-rc1

What's Changed

• September cleaning 1 by @cthoyt in #413
• Standardize usage of oboInOwl data by @cthoyt in #414
• Refactor SPARQL utilities to use curies.Converter by @cthoyt in #415
• Add converter to MappingSetDocument and MappingSetDataFrame by @cthoyt in #417
• Update testing and type checking by @cthoyt in #418
• Better handle URI fields when getting prefixes from metadata by @cthoyt in #420
• Use curies.Converter in OntoPortal exporter by @cthoyt in #416
• Use curies.Converter in Metadata object by @cthoyt in #421
• Fix ORCID URI prefixes in test data by @cthoyt in #423
• Improve MSDF instantiation and context functions by @cthoyt in #422
• Update context loading by @cthoyt in #425
• Remove needless output during tests by @cthoyt in #428
• Re-implement reconciliation code with curies by @cthoyt in #426
• Switch MSDF to use curies.Converter natively by @cthoyt in #430
• Simplify parsing SSSOM w/ curies.chain by @cthoyt in #431
• Explicitly use Python engine for pandas by @cthoyt in #435
• Cache schema object by @cthoyt in #443
• Standardize MSDF by @cthoyt in #438
• Be less draconian on alignment api parsing by @matentzn in #437
• Make MSDF with default converter by @cthoyt in #444
• Get MSDF from LinkML objects by @cthoyt in #440
• Remove "None" checks for df and metadata by @cthoyt in #442
• Rename type hint for Converters by @cthoyt in #445
• Remove duplicate definition of schema constant by @cthoyt in #446
• Test old versions of Pandas by @hrshdhgd in #433
• Refactor SSSOM Schema usage by @cthoyt in #449
• Refactor mapping code by @cthoyt in #450
• Added setuptools install to poetry and latest version of poetry by @hrshdhgd in #451
• Consolidate mapping metadata setting by @cthoyt in #455
• Refactor _extract_global_metadata() by @cthoyt in #452
• Directly unpack metadata tuple by @cthoyt in #453
• Cleanup Metadata usages by @cthoyt in #447
• Improve CURIE and IRI validation by @cthoyt in #459
• Update type hints for prefix map merging by @cthoyt in #454
• Clean up extract_iri functionality by @cthoyt in #460
• Upstream processing ambiguous URI or CURIE by @cthoyt in #463
• Update SSSOM Extended Prefix Map by @github-actions in #466
• Fix test after EPM update by @matentzn in #468
• Optimization of some functions by @hrshdhgd in #462

New Contributors

• @github-actions made their first contribution in #466

Full Changelog: v0.3.41...v0.4.0-rc1

v0.3.41

What's Changed

• Priorotize user-defined prefix_map by @hrshdhgd in #412

Full Changelog: v0.3.40...v0.3.41

v0.3.40

What's Changed

• Use curies' Converter in strict=False mode. by @hrshdhgd in #409

Full Changelog: v0.3.39...v0.3.40

v0.3.39

What's Changed

• Ran poetry update by @hrshdhgd in #407

Full Changelog: v0.3.37...v0.3.39

v0.3.38

What's Changed

• Add link to SEMAPV docs by @joeflack4 in #402
• Add poetry.lock back to versioning and trying minimal dependency by @hrshdhgd in #400
• Pruned dependencies by @hrshdhgd in #404
• Test prefix maps using bioregistry's epm as reference. by @hrshdhgd in #406

Full Changelog: v0.3.36...v0.3.38

v0.3.37

What's Changed

• Add link to SEMAPV docs by @joeflack4 in #402
• Add poetry.lock back to versioning and trying minimal dependency by @hrshdhgd in #400
• Pruned dependencies by @hrshdhgd in #404
• Test prefix maps using bioregistry's epm as reference. by @hrshdhgd in #406

Full Changelog: v0.3.36...v0.3.37

v0.3.37rc1

What's Changed

• Add link to SEMAPV docs by @joeflack4 in #402
• Add poetry.lock back to versioning and trying minimal dependency by @hrshdhgd in #400
• Pruned dependencies by @hrshdhgd in #404
• Test prefix maps using bioregistry's epm as reference. by @hrshdhgd in #406

Full Changelog: v0.3.36...v0.3.37rc1

v0.3.36

What's Changed

• scipy latest version creating incompatibility errors. by @hrshdhgd in #391
• Removes unnecessary external_context.py, clean Makefile & update dependencies. by @hrshdhgd in #394
• Use bioregistry as a resource for external prefix map via curies by @hrshdhgd in #396
• Remove poetry lock by @hrshdhgd in #399
• Begin using curies.Converter in more places by @cthoyt in #397

Full Changelog: v0.3.35...v0.3.36

v0.3.35

What's Changed

• Predicate modifier fix by @hrshdhgd in #389

Full Changelog: v0.3.34...v0.3.35