isoformic (Development Version)

Nothing yet

isoformic v0.1.1

Reference and Annotation

download_reference(): now supports organism = c("human", "mouse"), with organism = "human" being the default.
download_reference(): argument file_type = "gtf" is the default.
prepare_annotation(): Parse both GTF and GFF file formats into required annotation data.

Differential Expression Analysis

created run_swish_pairwise() function.

Bug Fixes

prepare_profile_data(): accepts matrix and data.frame as input for the txi_transcript argument.

isoformic v0.1.0

Initial support for SummarizedExperiment and MultiAssayExperiment.

isoformic v0.0.1

Release of the initial workflow.