Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Consider separating chromosomes on new dimension #3

Open
younik opened this issue May 29, 2023 · 0 comments
Open

Consider separating chromosomes on new dimension #3

younik opened this issue May 29, 2023 · 0 comments
Labels
enhancement New feature or request

Comments

@younik
Copy link
Contributor

younik commented May 29, 2023

Currently an individual is represented as a boolean array of shape(m, d), where all markers are on the same axis.
This has the advantage of allowing chromosomes to have a different number of markers.
However, it is possible to represent an individual as (c, m, d), where now c is the number of chromosomes and m the number of marker per chromosome. This allows to parallelize also over the chromosomes, and separate chromosomes more easily.
However, padding is needed when the number of markers per chromosome differ, and we should investigate if it is convenient.

@younik younik added the enhancement New feature or request label May 29, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant