Default directory structure of decencies might not match with code

[huijbers]

After installation, the default directory name of bids-matlab -a decency- is incorrect (when downloaded from git): bids-matlab =/= bids-matlab-master

When running the pipeline Error: bids-matlab cannot be found on your MATLABPATH

Quick fix: rename directory (or include in install instructions)
Proper fix: detect path to bids-matlab) and use dynamic path?

[jsheunis]

Thanks for logging this @huijbers! The "proper fix" could probably be the short term approach.

This is where the dependencies are checked, and it can be extended to search for variations on the base names of the dependent repositories. E.g. code can be added to check if bids-matlab or bids-matlab-master or bids-matlab-main is on the MATLAB.

A longer term option (as mentioned by @Remi-Gau) could be to consider using git submodules. I get the general idea but I haven't started looking into this further. If anyone wants to jump in, please do.