README.md

Human Reference Atlas (HRA) - User Interfaces

This repository is a monorepo (multiple projects in one repository) containing the software to build the EUI, RUI, and Organ-Info.

Website Links

• HRA Exploration User Interface (EUI)
  • 🌟 4.0 BETA: https://beta--hubmap-ccf-ui.netlify.app
  • Production: https://portal.hubmapconsortium.org/ccf-eui
  • Production (alt): https://hubmapconsortium.github.io/ccf-ui/
  • Staging: https://hubmap-ccf-ui.netlify.app/
  • Old Version 0.6.0: https://old--hubmap-ccf-ui.netlify.app
• HRA Registration User Interface (RUI)
  • 🌟 4.0 BETA: https://beta--hubmap-ccf-ui.netlify.app/rui/
  • Production: https://hubmapconsortium.github.io/ccf-ui/rui/
  • Staging: https://hubmap-ccf-ui.netlify.app/rui/
• HRA Organ Info Component (Organ-Info)
  • Production: https://hubmapconsortium.github.io/ccf-ui/organ-info/
  • Staging: https://hubmap-ccf-ui.netlify.app/organ-info/
• HRA API
  • Production: https://apps.humanatlas.io/hra-api/
  • Staging: https://apps.humanatlas.io/hra-api--staging/
  • OpenAPI Specification: ccf-api-spec.yaml
• HRA API Client Libraries:
  • JavaScript: @ccf-openapi/js-client
  • TypeScript: @ccf-openapi/ts-client
  • Angular 12+: @ccf-openapi/ng-client
  • Python 3.6+: ccf-openapi
• HRA API Sample Notebooks/Vignettes:
  • Python 3.6+:
    • Basic Usage: ccf-api-usage.ipynb
    • Use case walkthrough: ccf-api-usecase.ipynb
  • JavaScript:
    • Basic Usage: https://observablehq.com/@cns-iu/ccf-api-documentation-javascript
    • Use case walkthrough: https://observablehq.com/@cns-iu/ccf-api-usecase-javascript

Background and More Information

For more information about the Human Reference Atlas (HRA) and the Common Coordinate Framework (CCF), see the HuBMAP HRA Portal at https://humanatlas.io.

Change Log

See the ChangeLog for the latest developments.

Credits

This software is developed by the Cyberinfrastructure for Network Science Center at Indiana University. It is funded by NIH Award OT2OD026671.