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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(calculate_exon_couplings)
export(compute_exon_3end_couplings)
export(compute_exon_tss_couplings)
export(countLinks)
export(create_reference_junctions)
export(get_junctions_from_annot)
export(get_junctions_from_short_reads)
export(get_sailor_full_lengths)
export(make_annotation_txf)
export(make_junction_database)
export(prepareForCountEnds)
export(prepareForCountStarts)
export(prepareLinksDatabase)
export(readTESassignment)
export(readTSSassignment)
export(read_refjunction_correction)
export(read_sjout)
export(read_to_junctions)
import(GenomicAlignments)
import(GenomicFeatures)
import(S4Vectors)
import(dplyr)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(dplyr,"%>%")
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(rlang,.data)