blast-all.sub

# blast-all.sub - submission script  
universe = vanilla
# Log/error/output
log = blast-chtc-$(Cluster).log
error = blast-chtc-$(query)-vs-$(db).err
output = blast-chtc-$(query)-vs-$(db).out

# Execute
executable = blast-all.sh
arguments = $(Process) $(db) $(query)

should_transfer_files = YES
when_to_transfer_output = ON_EXIT
transfer_input_files = $(db).phr,$(db).pin,$(db).psq,$(query),/squid/blast2.2.29/bin/blastp, /squid/blast2.2.29/bin/blast_formatter

# Tell HTCondor what amount of compute resources

request_cpus = 1
request_memory = 1GB
request_disk = 250MB

# Tell HTCondor to run n instances of our job:
queue