Releases: ecell/ecell4_base
Releases · ecell/ecell4_base
v2.0.0b2
v2.0.0b1
v1.0.0
v1.0.dev3
v4.1.4
(2018-03-13)
If you want to download E-Cell4 whl files, see https://pypi.python.org/pypi/ecell
You need to specify the hdf5 version 1.8.17 in Windows.
conda install hdf5=1.8.17
Features
- Remove VacantType::getInstance() (57bc37fe)
- Add VacantType::allocate (bd9c34b9)
- Add OneToManyMap (27c21ad9)
- #183 Add an utility to generate equations in the LaTeX format (08803d86)
- #129 #139 Dump a brief description of the given Model (0adc4e97)
- extras::parse_version_information allows boost::regex and std::tr1::regex (1a916a60)
- Add the get_neighbor() and move_to_neighbor() to OffLatticeSpace (ad14e335)
- Add num_neighbors() function to LatticeSpace (ab9b6b36)
- Add the implementations of can_move() and move() to OffLatticeSpace (6dded0e9)
- Add a test for ParticleSpace (cd15c2b9)
- Add the default behavior for ParticleSpace::volume (dc8e5ce3)
- #159 Add TimingTrajectoryObserver (b8047eac)
- Add OffLatticeSpace class (a137eac1)
- Add VoxelSpaceBase class (db14ad62)
- Extend CSVObserver(s) for users to set own format (4bb9f5d7)
- #146 Save std::string with no limitation in its length (413ad479)
- #146 Save std::string with no limitation in its length (23297155)
- Add the DataSource module (c681497e)
Bug Fixes
- Add an include line to VoxelSpaceBase.hpp (4e6cf058)
- Use get_location_serial in SpatiocyteWorld (8b5303f5)
- Fix a null pointer bug (ef7be264)
- Avoid dangerous default value, [] and {} (a1cb436c)
- TransparentCallback inherits Callback class (8624ef1c)
- #169 A single variable could be parsed as a rate law (150f294e)
- Revert the HDF5 module (5de49b2b)
- #173 revert HDF5Writers (except LatticeSpaceHDF5Writer) to v4.0.8 (15532882)
- Do not forget to add a new file (213707f6)
- The function must return some value (13ea320c)
- Fix the bug of OffLatticeSpace::move_to_neighbor() (170a611d)
- Rename get_voxel(coordinate) to get_voxel_at(coordinate) in the python world (133dcd0b)
- Rename get_voxel(coordinate) to get_voxel_at(coordinate) in the python world (44b054a1)
- Fix a critical bug related to ParticleSpaceCellListImpl::remove_particle (facd73ff)
- Add a patch when merging (f2593dc4)
- H5std_string in struct doesn't work with scalar DataSet (2591e25b)
- Fix the bug of VoxelSpaceBase (99f3a3f3)
- Donot forget fi (0492ddfb)
- Can not perform a '--user' in the virtualenv (bae8ccd8)
- python is not placed at /usr/bin on linux (6ab791bd)
- Travis does not support Python3 on osx (7e4ba8a2)
- Oops! Fix a silly typo (8ae7b224)
- Add an unnecessary option when installing (87c44b36)
- Fix a wrong switching about the availability of shared libraries (47fd0855)
- Fix the walk_on_surface() (d23a6595)
- Donot search another neighbor once finding the one (092597cf)
- Uncomment LatticeSpace_test (0588a40e)
- Remove needless functions (7698d214)
- Allow to deepcopy ParseObj (c78d45a8)
v4.1.3
(2018-01-24)
If you want to download E-Cell4 whl files, see https://pypi.python.org/pypi/ecell
Features
- #183 Add an utility to generate equations in the LaTeX format (08803d86)
- #129 #139 Dump a brief description of the given Model (0adc4e97)
- extras::parse_version_information allows boost::regex and std::tr1::regex (1a916a60)
- Add the get_neighbor() and move_to_neighbor() to OffLatticeSpace (ad14e335)
- Add num_neighbors() function to LatticeSpace (ab9b6b36)
- Add the implementations of can_move() and move() to OffLatticeSpace (6dded0e9)
- Add a test for ParticleSpace (cd15c2b9)
- Add the default behavior for ParticleSpace::volume (dc8e5ce3)
- #159 Add TimingTrajectoryObserver (b8047eac)
- Add OffLatticeSpace class (a137eac1)
- Add VoxelSpaceBase class (db14ad62)
- Extend CSVObserver(s) for users to set own format (4bb9f5d7)
- #146 Save std::string with no limitation in its length (413ad479)
- #146 Save std::string with no limitation in its length (23297155)
- Add the DataSource module (c681497e)
Bug Fixes
- Fix a null pointer bug (ef7be264)
- Avoid dangerous default value, [] and {} (a1cb436c)
- TransparentCallback inherits Callback class (8624ef1c)
- #169 A single variable could be parsed as a rate law (150f294e)
- Revert the HDF5 module (5de49b2b)
- #173 revert HDF5Writers (except LatticeSpaceHDF5Writer) to v4.0.8 (15532882)
- Do not forget to add a new file (213707f6)
- The function must return some value (13ea320c)
- Fix the bug of OffLatticeSpace::move_to_neighbor() (170a611d)
- Rename get_voxel(coordinate) to get_voxel_at(coordinate) in the python world (133dcd0b)
- Rename get_voxel(coordinate) to get_voxel_at(coordinate) in the python world (44b054a1)
- Fix a critical bug related to ParticleSpaceCellListImpl::remove_particle (facd73ff)
- Add a patch when merging (f2593dc4)
- H5std_string in struct doesn't work with scalar DataSet (2591e25b)
- Fix the bug of VoxelSpaceBase (99f3a3f3)
- Donot forget fi (0492ddfb)
- Can not perform a '--user' in the virtualenv (bae8ccd8)
- python is not placed at /usr/bin on linux (6ab791bd)
- Travis does not support Python3 on osx (7e4ba8a2)
- Oops! Fix a silly typo (8ae7b224)
- Add an unnecessary option when installing (87c44b36)
- Fix a wrong switching about the availability of shared libraries (47fd0855)
- Fix the walk_on_surface() (d23a6595)
- Donot search another neighbor once finding the one (092597cf)
- Uncomment LatticeSpace_test (0588a40e)
v4.1.2
v4.1.1
(2017-04-07)
You can upgrade E-Cell4 with pip install -U ecell.
If you want to download E-Cell4 whl files, please see https://pypi.python.org/pypi/ecell/4.1.1
The whl files for Windows depend on HDF5 version 1.8.17.
Bug Fixes
- HDF5, corrupted double-linked list #173
v4.1.0
(2017-03-17)
If you want to download E-Cell4 whl files for Linux, please see https://github.com/ecell/ecell4-manylinux/releases/tag/v4.1.0
The wheels for Windows depend on HDF5 version 1.8.17.
Features
- extras::parse_version_information allows boost::regex and std::tr1::regex (ecell/ecell4@1a916a60)
- Add the get_neighbor() and move_to_neighbor() to OffLatticeSpace (ecell/ecell4@ad14e335)
- Add num_neighbors() function to LatticeSpace (ecell/ecell4@ab9b6b36)
- Add the implementations of can_move() and move() to OffLatticeSpace (ecell/ecell4@6dded0e9)
- Add a test for ParticleSpace (ecell/ecell4@cd15c2b9)
- Add the default behavior for ParticleSpace::volume (ecell/ecell4@dc8e5ce3)
- #159 Add TimingTrajectoryObserver (ecell/ecell4@b8047eac)
- Add OffLatticeSpace class (ecell/ecell4@a137eac1)
- Add VoxelSpaceBase class (ecell/ecell4@db14ad62)
- Extend CSVObserver(s) for users to set own format (ecell/ecell4@4bb9f5d7)
- #146 Save std::string with no limitation in its length (ecell/ecell4@413ad479)
- Add the DataSource module (ecell/ecell4@c681497e)
Bug Fixes
- The function must return some value (ecell/ecell4@13ea320c)
- Fix the bug of OffLatticeSpace::move_to_neighbor() (ecell/ecell4@170a611d)
- Rename get_voxel(coordinate) to get_voxel_at(coordinate) in the python world (ecell/ecell4@44b054a1)
- Fix a critical bug related to ParticleSpaceCellListImpl::remove_particle (ecell/ecell4@facd73ff)
- Add a patch when merging (ecell/ecell4@f2593dc4)
- H5std_string in struct doesn't work with scalar DataSet (ecell/ecell4@2591e25b)
- Fix the bug of VoxelSpaceBase (ecell/ecell4@99f3a3f3)
- Add an unnecessary option when installing (ecell/ecell4@87c44b36)
- Fix a wrong switching about the availability of shared libraries (ecell/ecell4@47fd0855)
- Fix the walk_on_surface() (ecell/ecell4@d23a6595)
- Donot search another neighbor once finding the one (ecell/ecell4@092597cf)
- Remove needless functions (ecell/ecell4@7698d214)
- Allow to deepcopy ParseObj (ecell/ecell4@c78d45a8)