From a3bb9b91f36559ffa66cae93a607a1d1baea1848 Mon Sep 17 00:00:00 2001 From: Caroline Malin-Mayor Date: Thu, 22 Aug 2024 11:45:27 -0400 Subject: [PATCH] Update README --- README.md | 10 ++-------- 1 file changed, 2 insertions(+), 8 deletions(-) diff --git a/README.md b/README.md index 80bbbd1..701b7bf 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ This exercise was created by Benjamin Gallusser and Albert Dominguez Mantes, and updated for 2024 by Caroline Malin-Mayor. - + ## Objective: - Write a pipeline that takes in cell detections and links them across time to obtain lineage trees @@ -16,13 +16,7 @@ and updated for 2024 by Caroline Malin-Mayor. ``` to set up the environment for this exercise. This will take a few minutes. -2. Run - ``` - jupyter lab - ``` - , double-click on the `exercise.ipynb` files and follow the instructions in the notebook. - - Alternatively, open `exercise.ipynb` in VSCode with the jupyter extension and the `09-tracking` environment activated. +2. Open `exercise.ipynb` in VSCode with the jupyter extension and select the `09-tracking` kernel. ## Overview: Tracking by detection with an integer linear program (ILP)