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mkdocs.yml
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mkdocs.yml
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site_name: dib-lab NSURP project
site_url: http://dib-lab.github.io/2020-NSURP/
repo_name: 2020-NSURP
repo_url: https://github.com/dib-lab/2020-NSURP
edit_uri: ""
copyright: 'Copyright © 2020 <a href="http://ivory.idyll.org/lab/">Lab for Data Intensive Biology</a> at UC Davis'
# change directory names here
docs_dir: doc
site_dir: site
theme:
name: material
# pretty colors! see https://squidfunk.github.io/mkdocs-material/getting-started/#primary-colors
palette:
primary: 'deep purple'
accent: 'indigo'
# fun logos! see https://material.io/icons/
icon:
logo: material/school
font:
text: 'Roboto'
code: 'Roboto Mono'
# optionally give a title for each page or section
nav:
- 'Home': 'index.md'
- "Setup":
- "Setting up Farm": "01.using-farm.md"
- "Install Conda": "02.conda.md"
- "Keeping a Lab Notebook": "03.lab-notebook.md"
- "Try Sourmash!": "04.sourmash-tutorial.md"
- "Starting a Work Session": "05.starting-a-work-session.md"
- "IBD Research Project":
- "Download and Visually Assess": "06.download-assess-ibd-data.md"
- "Quality Control": "07.quality-control.md"
- "Taxonomic Discovery with Sourmash": "08.taxonomic-discovery-with-sourmash.md"
- "Comparing Samples with Sourmash": "09.comparing-samples-with-sourmash.md"
- "Experiment Challenge": "11.experiment-challenge.md"
- "Advanced Modules":
- "Automation, Workflows, and Repeatability": "10.workflows-and-repeatability.md"
- "Version Control with Git and GitHub": "12.angus-github.md"