diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml index 2dac8ba..25e67a6 100644 --- a/.github/workflows/docker.yml +++ b/.github/workflows/docker.yml @@ -3,8 +3,8 @@ name: Docker on: push: tags: - - 'v*' - - 'docker*' + - "v*" + - "docker*" jobs: push_to_registry: @@ -20,8 +20,8 @@ jobs: # image: denglab/viroprofiler-binning # - dockerfile: ./docker/viroprofiler-geneannot/Dockerfile # image: denglab/viroprofiler-geneannot - # - dockerfile: ./docker/viroprofiler-host/Dockerfile - # image: denglab/viroprofiler-host + - dockerfile: ./docker/viroprofiler-host/Dockerfile + image: denglab/viroprofiler-host # - dockerfile: ./docker/viroprofiler-replicyc/Dockerfile # image: denglab/viroprofiler-replicyc # - dockerfile: ./docker/viroprofiler-taxa/Dockerfile @@ -34,8 +34,8 @@ jobs: # image: denglab/viroprofiler-bracken # - dockerfile: ./docker/viroprofiler-phamb/Dockerfile # image: denglab/viroprofiler-phamb - - dockerfile: ./docker/viroprofiler-virsorter2/Dockerfile - image: denglab/viroprofiler-virsorter2 + # - dockerfile: ./docker/viroprofiler-virsorter2/Dockerfile + # image: denglab/viroprofiler-virsorter2 permissions: contents: read packages: write @@ -46,19 +46,19 @@ jobs: # Docker Buildx - name: Set up Docker Buildx uses: docker/setup-buildx-action@v2 - + - name: Log in to Docker Hub uses: docker/login-action@v2 with: username: ${{ secrets.DOCKER_USER }} password: ${{ secrets.DOCKER_PASSWORD }} - + - name: Extract metadata (tags, labels) for Docker id: meta uses: docker/metadata-action@v4 with: images: ${{ matrix.image }} - + - name: Build and push Docker image uses: docker/build-push-action@v4 with: diff --git a/docker/viroprofiler-host/env_host.yml b/docker/viroprofiler-host/env_host.yml index 47dc5b1..81598d1 100644 --- a/docker/viroprofiler-host/env_host.yml +++ b/docker/viroprofiler-host/env_host.yml @@ -1,10 +1,9 @@ name: viroprofiler-host channels: - - conda-forge - - bioconda + - conda-forge + - bioconda dependencies: - - conda-forge::procps-ng=4.0.0 - - blast - - seqkit - - iphop - \ No newline at end of file + - conda-forge::procps-ng=4.0.0 + - blast + - seqkit + - iphop