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''Citationgraph''

  • Installation

Install conda from https://conda.io/docs/user-guide/install/index.html if you haven’t installed it already.

Make a new conda environment that uses python 3.5 with the required dependencies using:

conda env create --file citation_graph_env.yml

You can activate this environment with:

activate citationgraph

or

source activate citationgraph

depending on your OS.

  • Dependencies

** python 3 *** beautifulsoup4 *** requests *** lxml *** unidecode

  • Usage

The included python script can be used to convert paper's IDs (from PubMed, PubMed Central & DOIs) and fetch the following information for a given ID:

Papers citing and cited by our paper of interest

Article metadata available through NCBI's esummary

can be of use See //CitationGraph.py// for an example on how to use the script.

R Google Scholar package

Maybe this can be of use in your project as well!

https://cran.r-project.org/web/packages/scholar/vignettes/scholar.html

Added by team1

Install libraries and notebook

conda install networkx plotly notebook nb_conda