multiomics wellness data and parser update v1.7.2

[gglusman]

• API URL: https://biothings.ncats.io/multiomics_wellness_kp
• Github URL: https://github.com/Hadlock-Lab/Multiomics_Wellness_KP
• Git branch/commit: 1585146
• No. Documents: 679,420
• Main change: Added knowledge_level and agent_type to each edge.

[everaldorodrigo]

Hi @colleenXu @gglusman,

Do you know if the version for the next release is going to be the same as before, version 1.7? It follows these URLs:

• "https://storage.googleapis.com/multiomics_provider_kp_data/wellness/wellness_kg_edges_v1.7.tsv"
• "https://storage.googleapis.com/multiomics_provider_kp_data/wellness/wellness_kg_nodes_v1.7.tsv"

Thank you! Looking forward to your response. Best regards,
Everaldo

[gglusman]

Hmm, no, it's supposed to be 1.7.2. Where are you seeing those URLs? I may have neglected to change something.
Thanks!

[everaldorodrigo]

The URLs are in the manifest.json file here:

• https://github.com/Hadlock-Lab/multiomics_wellness_kp/blob/25aa9b6d94c48eb94bb18694b7c03332e5249741/manifest.json#L10

[gglusman]

Edited! ==> https://github.com/Hadlock-Lab/multiomics_wellness_kp/blob/main/manifest.json

[everaldorodrigo]

Hello @gglusman, I think we also need to change the version here:

• https://github.com/Hadlock-Lab/multiomics_wellness_kp/blob/cc3ff34d429fb655287b445c4a4e058f6485ea1e/version.py#L5

[gglusman]

Done (on main). Not sure how I feel about having the version number stated in so many different places...

[everaldorodrigo]

Done (on main). Not sure how I feel about having the version number stated in so many different places...

Agree! We could think a way to centralize the version number.

[gglusman]

Yesterday fixed a bug and updated the file parser. Same location, no version changes. Thanks!

[everaldorodrigo]

Hey @gglusman, the last changes were released to the CI environment. Let me know if the data looks good to you.

[colleenXu]

It looks like the "missing biolink prefix" on subject/object type is still happening (the same problem that I pointed out before in Translator Slack).

[gglusman]

Indeed, sorry about that!
Had to rebuild the graph to fix. Re-uploaded to the google bucket at same location. I guess @everaldorodrigo needs to reprocess it?

[everaldorodrigo]

Hi @gglusman and @colleenXu. I just released a new version to the CI environment.

Look, the total number of documents released is 668,753. It didn't match to the 679,420 documents showed in the description. I think worth a validation.