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example.sh
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#!/bin/bash
./calico.R -m -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_D03_Amplitude.csv -o example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve
./calico.R -c -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_D03_Amplitude.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D03_Amplitude.clustered.csv >> example/results/log.txt
./calico.R -p -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D03_Amplitude.clustered.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D03_Amplitude.clustered.png
./calico.R -c -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_D04_Amplitude.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D04_Amplitude.clustered.csv >> example/results/log.txt
./calico.R -p -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D04_Amplitude.clustered.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D04_Amplitude.clustered.png
./calico.R -c -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_D05_Amplitude.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D05_Amplitude.clustered.csv >> example/results/log.txt
./calico.R -p -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D05_Amplitude.clustered.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D05_Amplitude.clustered.png
./calico.R -c -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_D06_Amplitude.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D06_Amplitude.clustered.csv >> example/results/log.txt
./calico.R -p -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D06_Amplitude.clustered.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D06_Amplitude.clustered.png
./calico.R -c -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_D07_Amplitude.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D07_Amplitude.clustered.csv >> example/results/log.txt
./calico.R -p -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D07_Amplitude.clustered.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D07_Amplitude.clustered.png
./calico.R -c -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_D08_Amplitude.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D08_Amplitude.clustered.csv >> example/results/log.txt
./calico.R -p -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D08_Amplitude.clustered.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D08_Amplitude.clustered.png
./calico.R -c -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_D09_Amplitude.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D09_Amplitude.clustered.csv >> example/results/log.txt
./calico.R -p -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D09_Amplitude.clustered.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D09_Amplitude.clustered.png
./calico.R -c -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_D10_Amplitude.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D10_Amplitude.clustered.csv >> example/results/log.txt
./calico.R -p -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D10_Amplitude.clustered.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_D10_Amplitude.clustered.png
./calico.R -c -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_E03_Amplitude.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_E03_Amplitude.clustered.csv >> example/results/log.txt
./calico.R -p -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/results/20160923_MP_BRAFV600E_DNA_StdCurve_E03_Amplitude.clustered.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_E03_Amplitude.clustered.png
./calico.R -c -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_E04_Amplitude.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_E04_Amplitude.clustered.csv >> example/results/log.txt
./calico.R -p -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/results/20160923_MP_BRAFV600E_DNA_StdCurve_E04_Amplitude.clustered.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_E04_Amplitude.clustered.png
./calico.R -c -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_E05_Amplitude.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_E05_Amplitude.clustered.csv >> example/results/log.txt
./calico.R -p -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/results/20160923_MP_BRAFV600E_DNA_StdCurve_E05_Amplitude.clustered.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_E05_Amplitude.clustered.png
./calico.R -c -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_E06_Amplitude.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_E06_Amplitude.clustered.csv >> example/results/log.txt
./calico.R -p -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/results/20160923_MP_BRAFV600E_DNA_StdCurve_E06_Amplitude.clustered.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_E06_Amplitude.clustered.png
./calico.R -c -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_F03_Amplitude.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_F03_Amplitude.clustered.csv >> example/results/log.txt
./calico.R -p -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/results/20160923_MP_BRAFV600E_DNA_StdCurve_F03_Amplitude.clustered.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_F03_Amplitude.clustered.png
./calico.R -c -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_F04_Amplitude.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_F04_Amplitude.clustered.csv >> example/results/log.txt
./calico.R -p -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/results/20160923_MP_BRAFV600E_DNA_StdCurve_F04_Amplitude.clustered.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_F04_Amplitude.clustered.png
./calico.R -c -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_F05_Amplitude.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_F05_Amplitude.clustered.csv >> example/results/log.txt
./calico.R -p -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/results/20160923_MP_BRAFV600E_DNA_StdCurve_F05_Amplitude.clustered.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_F05_Amplitude.clustered.png
./calico.R -c -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/data/20160923_MP_BRAFV600E_DNA_StdCurve_F06_Amplitude.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_F06_Amplitude.clustered.csv >> example/results/log.txt
./calico.R -p -r example/results/model_20160923_MP_BRAFV600E_DNA_StdCurve -i example/results/20160923_MP_BRAFV600E_DNA_StdCurve_F06_Amplitude.clustered.csv -o example/results/20160923_MP_BRAFV600E_DNA_StdCurve_F06_Amplitude.clustered.png