# title: "NEON Tutorial: Using the API to request data"
# author: "Wynne Moss"date: "November 8, 2018" output: md_document neonscience.org/neon-api-usage API uses url to get the data Getting started----------------------#### install.packages("httr") install.packages("jsonlite") install.packages("downloader")
library(httr)
library(jsonlite) # data are in JSON format and this library will parse it
library(downloader)(If this is buggy, download NEONutilities packages too) Bird data example-----------####
req <- GET("http://data.neonscience.org/api/v0/products/DP1.10003.001") # up to V0 is the base URLproduct id for bird data
str(req)## List of 10
## $ url : chr "http://data.neonscience.org/api/v0/products/DP1.10003.001"
## $ status_code: int 200
## $ headers :List of 10
## ..$ date : chr "Fri, 09 Nov 2018 20:08:22 GMT"
## ..$ server : chr "Apache/2.2.15 (Oracle)"
## ..$ x-content-type-options : chr "nosniff"
## ..$ x-frame-options : chr "SAMEORIGIN"
## ..$ x-xss-protection : chr "1"
## ..$ set-cookie : chr "JSESSIONID=DFE4E23BFA720D960127598F3ECF29EE.dmz-portal-web-1; Path=/; HttpOnly"
## ..$ access-control-allow-origin: chr "*"
## ..$ connection : chr "close"
## ..$ transfer-encoding : chr "chunked"
## ..$ content-type : chr "application/json;charset=UTF-8"
## ..- attr(*, "class")= chr [1:2] "insensitive" "list"
## $ all_headers:List of 1
## ..$ :List of 3
## .. ..$ status : int 200
## .. ..$ version: chr "HTTP/1.1"
## .. ..$ headers:List of 10
## .. .. ..$ date : chr "Fri, 09 Nov 2018 20:08:22 GMT"
## .. .. ..$ server : chr "Apache/2.2.15 (Oracle)"
## .. .. ..$ x-content-type-options : chr "nosniff"
## .. .. ..$ x-frame-options : chr "SAMEORIGIN"
## .. .. ..$ x-xss-protection : chr "1"
## .. .. ..$ set-cookie : chr "JSESSIONID=DFE4E23BFA720D960127598F3ECF29EE.dmz-portal-web-1; Path=/; HttpOnly"
## .. .. ..$ access-control-allow-origin: chr "*"
## .. .. ..$ connection : chr "close"
## .. .. ..$ transfer-encoding : chr "chunked"
## .. .. ..$ content-type : chr "application/json;charset=UTF-8"
## .. .. ..- attr(*, "class")= chr [1:2] "insensitive" "list"
## $ cookies :'data.frame': 1 obs. of 7 variables:
## ..$ domain : chr "#HttpOnly_data.neonscience.org"
## ..$ flag : logi FALSE
## ..$ path : chr "/"
## ..$ secure : logi FALSE
## ..$ expiration: POSIXct[1:1], format: NA
## ..$ name : chr "JSESSIONID"
## ..$ value : chr "DFE4E23BFA720D960127598F3ECF29EE.dmz-portal-web-1"
## $ content : raw [1:13697] 7b 22 64 61 ...
## $ date : POSIXct[1:1], format: "2018-11-09 20:08:22"
## $ times : Named num [1:6] 0 0.0596 0.064 0.0641 0.0721 ...
## ..- attr(*, "names")= chr [1:6] "redirect" "namelookup" "connect" "pretransfer" ...
## $ request :List of 7
## ..$ method : chr "GET"
## ..$ url : chr "http://data.neonscience.org/api/v0/products/DP1.10003.001"
## ..$ headers : Named chr "application/json, text/xml, application/xml, */*"
## .. ..- attr(*, "names")= chr "Accept"
## ..$ fields : NULL
## ..$ options :List of 2
## .. ..$ useragent: chr "libcurl/7.43.0 r-curl/3.2 httr/1.3.1"
## .. ..$ httpget : logi TRUE
## ..$ auth_token: NULL
## ..$ output : list()
## .. ..- attr(*, "class")= chr [1:2] "write_memory" "write_function"
## ..- attr(*, "class")= chr "request"
## $ handle :Class 'curl_handle' <externalptr>
## - attr(*, "class")= chr "response"
all this says is that the data exist use JSON lite package to pull out the actual data
req.content <- content(req, as = "parsed")req.content # big old nested list available sites and months for the product we queried
available <- fromJSON(content(req, as = "text"))
available## $data
## $data$productCodeLong
## [1] "NEON.DOM.SITE.DP1.10003.001"
##
## $data$productCode
## [1] "DP1.10003.001"
##
## $data$productCodePresentation
## [1] "NEON.DP1.10003"
##
## $data$productName
## [1] "Breeding landbird point counts"
##
## $data$productDescription
## [1] "Count, distance from observer, and taxonomic identification of breeding landbirds observed during point counts"
##
## $data$productStatus
## [1] "ACTIVE"
##
## $data$productCategory
## [1] "Level 1 Data Product"
##
## $data$productHasExpanded
## [1] TRUE
##
## $data$productScienceTeamAbbr
## [1] "TOS"
##
## $data$productScienceTeam
## [1] "Terrestrial Observation System (TOS)"
##
## $data$productAbstract
## [1] "This data product contains the quality-controlled, native sampling resolution data from NEON's breeding landbird sampling. Breeding landbirds are defined as “smaller birds (usually exclusive of raptors and upland game birds) not usually associated with aquatic habitats” (Ralph et al. 1993). The breeding landbird point counts product provides records of species identification of all individuals observed during the 6-minute count period, as well as metadata which can be used to model detectability, e.g., weather, distances from observers to birds, and detection methods. The NEON point count method is adapted from the Integrated Monitoring in Bird Conservation Regions (IMBCR): Field protocol for spatially-balanced sampling of landbird populations (Hanni et al. 2017; http://bit.ly/2u2ChUB). For additional details, see protocol [NEON.DOC.014041](http://data.neonscience.org/api/v0/documents/NEON.DOC.014041vF): TOS Protocol and Procedure: Breeding Landbird Abundance and Diversity and science design [NEON.DOC.000916](http://data.neonscience.org/api/v0/documents/NEON.DOC.000916vB): TOS Science Design for Breeding Landbird Abundance and Diversity."
##
## $data$productDesignDescription
## [1] "Depending on the size of the site, sampling for this product occurs either at either randomly distributed individual points or grids of nine points each. At larger sites, point count sampling occurs at five to fifteen 9-point grids, with grid centers collocated with distributed base plot centers (where plant, beetle, and/or soil sampling may also occur), if possible. At smaller sites (i.e., sites that cannot accommodate a minimum of 5 grids) point counts occur at the southwest corner (point 21) of 5-25 distributed base plots. Point counts are conducted once per breeding season at large sites and twice per breeding season at smaller sites. Point counts are six minutes long, with each minute tracked by the observer, following a two-minute settling-in period. All birds are recorded to species and sex, whenever possible, and the distance to each individual or flock is measured with a laser rangefinder, except in the case of flyovers."
##
## $data$productStudyDescription
## [1] "This sampling occurs at all NEON terrestrial sites."
##
## $data$productSensor
## NULL
##
## $data$productRemarks
## [1] "Queries for this data product will return data collected during the date range specified for brd_perpoint and brd_countdata, but will return data from all dates for brd_personnel (quiz scores may occur over time periods which are distinct from when sampling occurs) and brd_references (which apply to a broad range of sampling dates). A record from brd_perPoint should have 6+ child records in brd_countdata, at least one per pointCountMinute. Duplicates or missing data may exist where protocol and/or data entry aberrations have occurred; users should check data carefully for anomalies before joining tables. Taxonomic IDs of species of concern have been 'fuzzed'; see data package readme files for more information."
##
## $data$themes
## [1] "Organisms, Populations, and Communities"
##
## $data$changeLogs
## NULL
##
## $data$specs
## specId specNumber
## 1 3656 NEON.DOC.000916vC
## 2 2565 NEON_bird_userGuide_vA
## 3 3729 NEON.DOC.014041vJ
##
## $data$keywords
## [1] "birds" "diversity"
## [3] "taxonomy" "community composition"
## [5] "distance sampling" "avian"
## [7] "species composition" "population"
## [9] "vertebrates" "invasive"
## [11] "introduced" "native"
## [13] "landbirds" "animals"
## [15] "Animalia" "Aves"
## [17] "Chordata" "point counts"
##
## $data$siteCodes
## siteCode availableMonths
## 1 ORNL 2016-05, 2016-06, 2017-05
## 2 UKFS 2017-06
## 3 CPER 2013-06, 2015-05, 2016-05, 2017-05, 2017-06
## 4 WOOD 2015-07, 2017-07
## 5 HEAL 2017-06
## 6 TALL 2015-06, 2016-07, 2017-06
## 7 JERC 2016-06, 2017-05
## 8 NOGP 2017-07
## 9 LAJA 2017-05
## 10 OSBS 2016-05, 2017-05
## 11 DCFS 2017-06, 2017-07
## 12 KONZ 2017-06
## 13 DEJU 2017-06
## 14 LENO 2017-06
## 15 RMNP 2017-06, 2017-07
## 16 HARV 2015-05, 2015-06, 2016-06, 2017-06
## 17 BART 2015-06, 2016-06, 2017-06
## 18 BONA 2017-06
## 19 BARR 2017-07
## 20 SJER 2017-04
## 21 STEI 2016-05, 2016-06, 2017-06
## 22 JORN 2017-04, 2017-05
## 23 GRSM 2016-06, 2017-05, 2017-06
## 24 OAES 2017-05, 2017-06
## 25 SERC 2017-05, 2017-06
## 26 ABBY 2017-05, 2017-06
## 27 MOAB 2015-06, 2017-05
## 28 STER 2013-06, 2015-05, 2016-05, 2017-05
## 29 BLAN 2017-05, 2017-06
## 30 DELA 2015-06, 2017-06
## 31 ONAQ 2017-05
## 32 SRER 2017-05
## 33 SOAP 2017-05
## 34 CLBJ 2017-05
## 35 SCBI 2015-06, 2016-05, 2016-06, 2017-05, 2017-06
## 36 NIWO 2015-07, 2017-07
## 37 PUUM 2018-04
## 38 TREE 2016-06, 2017-06
## 39 DSNY 2015-06, 2016-05, 2017-05
## 40 GUAN 2015-05, 2017-05
## 41 TEAK 2017-06
## 42 UNDE 2016-06, 2016-07, 2017-06
## 43 TOOL 2017-06
## availableDataUrls
## 1 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ORNL/2016-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ORNL/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ORNL/2017-05
## 2 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/UKFS/2017-06
## 3 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2013-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2015-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2016-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2017-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2017-06
## 4 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/WOOD/2015-07, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/WOOD/2017-07
## 5 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HEAL/2017-06
## 6 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TALL/2015-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TALL/2016-07, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TALL/2017-06
## 7 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/JERC/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/JERC/2017-05
## 8 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/NOGP/2017-07
## 9 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/LAJA/2017-05
## 10 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/OSBS/2016-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/OSBS/2017-05
## 11 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DCFS/2017-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DCFS/2017-07
## 12 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/KONZ/2017-06
## 13 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DEJU/2017-06
## 14 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/LENO/2017-06
## 15 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/RMNP/2017-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/RMNP/2017-07
## 16 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HARV/2015-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HARV/2015-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HARV/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HARV/2017-06
## 17 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BART/2015-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BART/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BART/2017-06
## 18 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BONA/2017-06
## 19 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BARR/2017-07
## 20 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SJER/2017-04
## 21 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STEI/2016-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STEI/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STEI/2017-06
## 22 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/JORN/2017-04, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/JORN/2017-05
## 23 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GRSM/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GRSM/2017-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GRSM/2017-06
## 24 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/OAES/2017-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/OAES/2017-06
## 25 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SERC/2017-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SERC/2017-06
## 26 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ABBY/2017-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ABBY/2017-06
## 27 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/MOAB/2015-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/MOAB/2017-05
## 28 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STER/2013-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STER/2015-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STER/2016-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STER/2017-05
## 29 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BLAN/2017-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BLAN/2017-06
## 30 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DELA/2015-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DELA/2017-06
## 31 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ONAQ/2017-05
## 32 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SRER/2017-05
## 33 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SOAP/2017-05
## 34 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CLBJ/2017-05
## 35 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2015-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2016-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2017-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2017-06
## 36 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/NIWO/2015-07, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/NIWO/2017-07
## 37 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/PUUM/2018-04
## 38 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TREE/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TREE/2017-06
## 39 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DSNY/2015-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DSNY/2016-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DSNY/2017-05
## 40 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GUAN/2015-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GUAN/2017-05
## 41 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TEAK/2017-06
## 42 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/UNDE/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/UNDE/2016-07, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/UNDE/2017-06
## 43 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TOOL/2017-06
# same info but in a little more readable form
available$data$siteCodes## siteCode availableMonths
## 1 ORNL 2016-05, 2016-06, 2017-05
## 2 UKFS 2017-06
## 3 CPER 2013-06, 2015-05, 2016-05, 2017-05, 2017-06
## 4 WOOD 2015-07, 2017-07
## 5 HEAL 2017-06
## 6 TALL 2015-06, 2016-07, 2017-06
## 7 JERC 2016-06, 2017-05
## 8 NOGP 2017-07
## 9 LAJA 2017-05
## 10 OSBS 2016-05, 2017-05
## 11 DCFS 2017-06, 2017-07
## 12 KONZ 2017-06
## 13 DEJU 2017-06
## 14 LENO 2017-06
## 15 RMNP 2017-06, 2017-07
## 16 HARV 2015-05, 2015-06, 2016-06, 2017-06
## 17 BART 2015-06, 2016-06, 2017-06
## 18 BONA 2017-06
## 19 BARR 2017-07
## 20 SJER 2017-04
## 21 STEI 2016-05, 2016-06, 2017-06
## 22 JORN 2017-04, 2017-05
## 23 GRSM 2016-06, 2017-05, 2017-06
## 24 OAES 2017-05, 2017-06
## 25 SERC 2017-05, 2017-06
## 26 ABBY 2017-05, 2017-06
## 27 MOAB 2015-06, 2017-05
## 28 STER 2013-06, 2015-05, 2016-05, 2017-05
## 29 BLAN 2017-05, 2017-06
## 30 DELA 2015-06, 2017-06
## 31 ONAQ 2017-05
## 32 SRER 2017-05
## 33 SOAP 2017-05
## 34 CLBJ 2017-05
## 35 SCBI 2015-06, 2016-05, 2016-06, 2017-05, 2017-06
## 36 NIWO 2015-07, 2017-07
## 37 PUUM 2018-04
## 38 TREE 2016-06, 2017-06
## 39 DSNY 2015-06, 2016-05, 2017-05
## 40 GUAN 2015-05, 2017-05
## 41 TEAK 2017-06
## 42 UNDE 2016-06, 2016-07, 2017-06
## 43 TOOL 2017-06
## availableDataUrls
## 1 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ORNL/2016-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ORNL/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ORNL/2017-05
## 2 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/UKFS/2017-06
## 3 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2013-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2015-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2016-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2017-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2017-06
## 4 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/WOOD/2015-07, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/WOOD/2017-07
## 5 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HEAL/2017-06
## 6 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TALL/2015-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TALL/2016-07, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TALL/2017-06
## 7 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/JERC/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/JERC/2017-05
## 8 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/NOGP/2017-07
## 9 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/LAJA/2017-05
## 10 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/OSBS/2016-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/OSBS/2017-05
## 11 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DCFS/2017-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DCFS/2017-07
## 12 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/KONZ/2017-06
## 13 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DEJU/2017-06
## 14 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/LENO/2017-06
## 15 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/RMNP/2017-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/RMNP/2017-07
## 16 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HARV/2015-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HARV/2015-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HARV/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HARV/2017-06
## 17 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BART/2015-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BART/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BART/2017-06
## 18 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BONA/2017-06
## 19 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BARR/2017-07
## 20 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SJER/2017-04
## 21 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STEI/2016-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STEI/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STEI/2017-06
## 22 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/JORN/2017-04, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/JORN/2017-05
## 23 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GRSM/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GRSM/2017-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GRSM/2017-06
## 24 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/OAES/2017-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/OAES/2017-06
## 25 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SERC/2017-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SERC/2017-06
## 26 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ABBY/2017-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ABBY/2017-06
## 27 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/MOAB/2015-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/MOAB/2017-05
## 28 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STER/2013-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STER/2015-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STER/2016-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STER/2017-05
## 29 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BLAN/2017-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BLAN/2017-06
## 30 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DELA/2015-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DELA/2017-06
## 31 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ONAQ/2017-05
## 32 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SRER/2017-05
## 33 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SOAP/2017-05
## 34 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CLBJ/2017-05
## 35 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2015-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2016-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2017-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2017-06
## 36 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/NIWO/2015-07, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/NIWO/2017-07
## 37 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/PUUM/2018-04
## 38 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TREE/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TREE/2017-06
## 39 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DSNY/2015-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DSNY/2016-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DSNY/2017-05
## 40 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GUAN/2015-05, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GUAN/2017-05
## 41 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TEAK/2017-06
## 42 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/UNDE/2016-06, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/UNDE/2016-07, http://data.neonscience.org:80/api/v0/data/DP1.10003.001/UNDE/2017-06
## 43 http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TOOL/2017-06
available$data$siteCodes[,3]## [[1]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ORNL/2016-05"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ORNL/2016-06"
## [3] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ORNL/2017-05"
##
## [[2]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/UKFS/2017-06"
##
## [[3]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2013-06"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2015-05"
## [3] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2016-05"
## [4] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2017-05"
## [5] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2017-06"
##
## [[4]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/WOOD/2015-07"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/WOOD/2017-07"
##
## [[5]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HEAL/2017-06"
##
## [[6]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TALL/2015-06"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TALL/2016-07"
## [3] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TALL/2017-06"
##
## [[7]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/JERC/2016-06"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/JERC/2017-05"
##
## [[8]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/NOGP/2017-07"
##
## [[9]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/LAJA/2017-05"
##
## [[10]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/OSBS/2016-05"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/OSBS/2017-05"
##
## [[11]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DCFS/2017-06"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DCFS/2017-07"
##
## [[12]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/KONZ/2017-06"
##
## [[13]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DEJU/2017-06"
##
## [[14]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/LENO/2017-06"
##
## [[15]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/RMNP/2017-06"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/RMNP/2017-07"
##
## [[16]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HARV/2015-05"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HARV/2015-06"
## [3] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HARV/2016-06"
## [4] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HARV/2017-06"
##
## [[17]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BART/2015-06"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BART/2016-06"
## [3] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BART/2017-06"
##
## [[18]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BONA/2017-06"
##
## [[19]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BARR/2017-07"
##
## [[20]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SJER/2017-04"
##
## [[21]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STEI/2016-05"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STEI/2016-06"
## [3] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STEI/2017-06"
##
## [[22]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/JORN/2017-04"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/JORN/2017-05"
##
## [[23]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GRSM/2016-06"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GRSM/2017-05"
## [3] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GRSM/2017-06"
##
## [[24]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/OAES/2017-05"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/OAES/2017-06"
##
## [[25]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SERC/2017-05"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SERC/2017-06"
##
## [[26]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ABBY/2017-05"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ABBY/2017-06"
##
## [[27]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/MOAB/2015-06"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/MOAB/2017-05"
##
## [[28]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STER/2013-06"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STER/2015-05"
## [3] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STER/2016-05"
## [4] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STER/2017-05"
##
## [[29]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BLAN/2017-05"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BLAN/2017-06"
##
## [[30]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DELA/2015-06"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DELA/2017-06"
##
## [[31]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ONAQ/2017-05"
##
## [[32]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SRER/2017-05"
##
## [[33]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SOAP/2017-05"
##
## [[34]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CLBJ/2017-05"
##
## [[35]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2015-06"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2016-05"
## [3] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2016-06"
## [4] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2017-05"
## [5] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2017-06"
##
## [[36]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/NIWO/2015-07"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/NIWO/2017-07"
##
## [[37]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/PUUM/2018-04"
##
## [[38]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TREE/2016-06"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TREE/2017-06"
##
## [[39]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DSNY/2015-06"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DSNY/2016-05"
## [3] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DSNY/2017-05"
##
## [[40]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GUAN/2015-05"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GUAN/2017-05"
##
## [[41]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TEAK/2017-06"
##
## [[42]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/UNDE/2016-06"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/UNDE/2016-07"
## [3] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/UNDE/2017-06"
##
## [[43]]
## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TOOL/2017-06"
third columns is the urls of SPECIFIC data sites/months
bird.urls <- unlist(available$data$siteCodes$availableDataUrls)
bird.urls## [1] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ORNL/2016-05"
## [2] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ORNL/2016-06"
## [3] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ORNL/2017-05"
## [4] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/UKFS/2017-06"
## [5] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2013-06"
## [6] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2015-05"
## [7] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2016-05"
## [8] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2017-05"
## [9] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CPER/2017-06"
## [10] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/WOOD/2015-07"
## [11] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/WOOD/2017-07"
## [12] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HEAL/2017-06"
## [13] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TALL/2015-06"
## [14] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TALL/2016-07"
## [15] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TALL/2017-06"
## [16] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/JERC/2016-06"
## [17] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/JERC/2017-05"
## [18] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/NOGP/2017-07"
## [19] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/LAJA/2017-05"
## [20] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/OSBS/2016-05"
## [21] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/OSBS/2017-05"
## [22] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DCFS/2017-06"
## [23] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DCFS/2017-07"
## [24] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/KONZ/2017-06"
## [25] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DEJU/2017-06"
## [26] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/LENO/2017-06"
## [27] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/RMNP/2017-06"
## [28] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/RMNP/2017-07"
## [29] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HARV/2015-05"
## [30] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HARV/2015-06"
## [31] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HARV/2016-06"
## [32] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/HARV/2017-06"
## [33] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BART/2015-06"
## [34] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BART/2016-06"
## [35] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BART/2017-06"
## [36] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BONA/2017-06"
## [37] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BARR/2017-07"
## [38] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SJER/2017-04"
## [39] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STEI/2016-05"
## [40] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STEI/2016-06"
## [41] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STEI/2017-06"
## [42] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/JORN/2017-04"
## [43] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/JORN/2017-05"
## [44] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GRSM/2016-06"
## [45] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GRSM/2017-05"
## [46] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GRSM/2017-06"
## [47] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/OAES/2017-05"
## [48] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/OAES/2017-06"
## [49] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SERC/2017-05"
## [50] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SERC/2017-06"
## [51] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ABBY/2017-05"
## [52] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ABBY/2017-06"
## [53] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/MOAB/2015-06"
## [54] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/MOAB/2017-05"
## [55] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STER/2013-06"
## [56] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STER/2015-05"
## [57] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STER/2016-05"
## [58] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/STER/2017-05"
## [59] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BLAN/2017-05"
## [60] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/BLAN/2017-06"
## [61] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DELA/2015-06"
## [62] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DELA/2017-06"
## [63] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/ONAQ/2017-05"
## [64] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SRER/2017-05"
## [65] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SOAP/2017-05"
## [66] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/CLBJ/2017-05"
## [67] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2015-06"
## [68] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2016-05"
## [69] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2016-06"
## [70] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2017-05"
## [71] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/SCBI/2017-06"
## [72] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/NIWO/2015-07"
## [73] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/NIWO/2017-07"
## [74] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/PUUM/2018-04"
## [75] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TREE/2016-06"
## [76] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TREE/2017-06"
## [77] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DSNY/2015-06"
## [78] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DSNY/2016-05"
## [79] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/DSNY/2017-05"
## [80] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GUAN/2015-05"
## [81] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/GUAN/2017-05"
## [82] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TEAK/2017-06"
## [83] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/UNDE/2016-06"
## [84] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/UNDE/2016-07"
## [85] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/UNDE/2017-06"
## [86] "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/TOOL/2017-06"
bird <- GET(bird.urls[grep("WOOD/2015-07", bird.urls)]) #' just get the URL with thisGET will only work with one URL
str(bird) #' another request response## List of 10
## $ url : chr "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/WOOD/2015-07"
## $ status_code: int 200
## $ headers :List of 10
## ..$ date : chr "Fri, 09 Nov 2018 20:08:22 GMT"
## ..$ server : chr "Apache/2.2.15 (Oracle)"
## ..$ x-content-type-options : chr "nosniff"
## ..$ x-frame-options : chr "SAMEORIGIN"
## ..$ x-xss-protection : chr "1"
## ..$ set-cookie : chr "JSESSIONID=3DCDECF4F6AD4EEE5F15AEF2ECA42C63.dmz-portal-web-3; Path=/; HttpOnly"
## ..$ access-control-allow-origin: chr "*"
## ..$ connection : chr "close"
## ..$ transfer-encoding : chr "chunked"
## ..$ content-type : chr "application/json;charset=UTF-8"
## ..- attr(*, "class")= chr [1:2] "insensitive" "list"
## $ all_headers:List of 1
## ..$ :List of 3
## .. ..$ status : int 200
## .. ..$ version: chr "HTTP/1.1"
## .. ..$ headers:List of 10
## .. .. ..$ date : chr "Fri, 09 Nov 2018 20:08:22 GMT"
## .. .. ..$ server : chr "Apache/2.2.15 (Oracle)"
## .. .. ..$ x-content-type-options : chr "nosniff"
## .. .. ..$ x-frame-options : chr "SAMEORIGIN"
## .. .. ..$ x-xss-protection : chr "1"
## .. .. ..$ set-cookie : chr "JSESSIONID=3DCDECF4F6AD4EEE5F15AEF2ECA42C63.dmz-portal-web-3; Path=/; HttpOnly"
## .. .. ..$ access-control-allow-origin: chr "*"
## .. .. ..$ connection : chr "close"
## .. .. ..$ transfer-encoding : chr "chunked"
## .. .. ..$ content-type : chr "application/json;charset=UTF-8"
## .. .. ..- attr(*, "class")= chr [1:2] "insensitive" "list"
## $ cookies :'data.frame': 1 obs. of 7 variables:
## ..$ domain : chr "#HttpOnly_data.neonscience.org"
## ..$ flag : logi FALSE
## ..$ path : chr "/"
## ..$ secure : logi FALSE
## ..$ expiration: POSIXct[1:1], format: NA
## ..$ name : chr "JSESSIONID"
## ..$ value : chr "3DCDECF4F6AD4EEE5F15AEF2ECA42C63.dmz-portal-web-3"
## $ content : raw [1:9687] 7b 22 64 61 ...
## $ date : POSIXct[1:1], format: "2018-11-09 20:08:22"
## $ times : Named num [1:6] 0 0.000019 0.005146 0.005253 0.041663 ...
## ..- attr(*, "names")= chr [1:6] "redirect" "namelookup" "connect" "pretransfer" ...
## $ request :List of 7
## ..$ method : chr "GET"
## ..$ url : chr "http://data.neonscience.org:80/api/v0/data/DP1.10003.001/WOOD/2015-07"
## ..$ headers : Named chr "application/json, text/xml, application/xml, */*"
## .. ..- attr(*, "names")= chr "Accept"
## ..$ fields : NULL
## ..$ options :List of 2
## .. ..$ useragent: chr "libcurl/7.43.0 r-curl/3.2 httr/1.3.1"
## .. ..$ httpget : logi TRUE
## ..$ auth_token: NULL
## ..$ output : list()
## .. ..- attr(*, "class")= chr [1:2] "write_memory" "write_function"
## ..- attr(*, "class")= chr "request"
## $ handle :Class 'curl_handle' <externalptr>
## - attr(*, "class")= chr "response"
bird.files <- fromJSON(content(bird, as = "text"))
str(bird.files)## List of 1
## $ data:List of 4
## ..$ files :'data.frame': 16 obs. of 4 variables:
## .. ..$ crc32: chr [1:16] "4d4f86c1379dece680185e992a471432" "71e695abae2d1943d13e53c95430c6f5" "5428880d2a72e66319eb6f29576a49af" "7c999e9ae4f7d94eaa2c11aadaeecd0b" ...
## .. ..$ name : chr [1:16] "NEON.D09.WOOD.DP1.10003.001.brd_perpoint.2015-07.basic.20180418T200718Z.csv" "NEON.D09.WOOD.DP1.10003.001.EML.20150701-20150705.20180418T200718Z.xml" "NEON.D09.WOOD.DP1.10003.001.readme.20180418T200718Z.txt" "NEON.D09.WOOD.DP1.10003.001.brd_countdata.2015-07.basic.20180418T200718Z.csv" ...
## .. ..$ size : chr [1:16] "23962" "70196" "12361" "355660" ...
## .. ..$ url : chr [1:16] "https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801"| __truncated__ "https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801"| __truncated__ "https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801"| __truncated__ "https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801"| __truncated__ ...
## ..$ productCode: chr "DP1.10003.001"
## ..$ siteCode : chr "WOOD"
## ..$ month : chr "2015-07"
bird.files$data## $files
## crc32
## 1 4d4f86c1379dece680185e992a471432
## 2 71e695abae2d1943d13e53c95430c6f5
## 3 5428880d2a72e66319eb6f29576a49af
## 4 7c999e9ae4f7d94eaa2c11aadaeecd0b
## 5 19adfd2c8bedfe867646644e1985dca0
## 6 0cde0267b9141a0f37a14dc7e5c7084a
## 7 dd27e83b9a5e4a7453f284ae13d1f32d
## 8 28bbedc80a738c2cd16afad21319136f
## 9 4d4f86c1379dece680185e992a471432
## 10 dd27e83b9a5e4a7453f284ae13d1f32d
## 11 02506292f09b5a4ebcc055b279621f8e
## 12 81ddde9f27c7ba6d5a9f6cfb07ae78d3
## 13 19adfd2c8bedfe867646644e1985dca0
## 14 bba1d7554ff524604e64ffcb0b23c0b0
## 15 51b19ca519653f87c7732791b345f89e
## 16 8dca69c9edcf4f3df4ee7fa3a0a624dc
## name
## 1 NEON.D09.WOOD.DP1.10003.001.brd_perpoint.2015-07.basic.20180418T200718Z.csv
## 2 NEON.D09.WOOD.DP1.10003.001.EML.20150701-20150705.20180418T200718Z.xml
## 3 NEON.D09.WOOD.DP1.10003.001.readme.20180418T200718Z.txt
## 4 NEON.D09.WOOD.DP1.10003.001.brd_countdata.2015-07.basic.20180418T200718Z.csv
## 5 NEON.D09.WOOD.DP0.10003.001.validation.20180418T200718Z.csv
## 6 NEON.D09.WOOD.DP1.10003.001.2015-07.basic.20180418T200718Z.zip
## 7 NEON.D09.WOOD.DP1.10003.001.variables.20180418T200718Z.csv
## 8 NEON.D09.WOOD.DP1.10003.001.2015-07.expanded.20180418T200718Z.zip
## 9 NEON.D09.WOOD.DP1.10003.001.brd_perpoint.2015-07.expanded.20180418T200718Z.csv
## 10 NEON.D09.WOOD.DP1.10003.001.variables.20180418T200718Z.csv
## 11 NEON.D09.WOOD.DP1.10003.001.EML.20150701-20150705.20180418T200718Z.xml
## 12 NEON.D09.WOOD.DP1.10003.001.brd_countdata.2015-07.expanded.20180418T200718Z.csv
## 13 NEON.D09.WOOD.DP0.10003.001.validation.20180418T200718Z.csv
## 14 NEON.Bird_Conservancy_of_the_Rockies.brd_personnel.csv
## 15 NEON.D09.WOOD.DP1.10003.001.readme.20180418T200718Z.txt
## 16 NEON.D09.WOOD.DP1.10003.001.brd_references.expanded.20180418T200718Z.csv
## size
## 1 23962
## 2 70196
## 3 12361
## 4 355660
## 5 9830
## 6 67654
## 7 7280
## 8 72540
## 9 23962
## 10 7280
## 11 78407
## 12 376383
## 13 9830
## 14 11918
## 15 12640
## 16 650
## url
## 1 https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801T000000/basic/NEON.D09.WOOD.DP1.10003.001.brd_perpoint.2015-07.basic.20180418T200718Z.csv?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181109T200822Z&X-Amz-SignedHeaders=host&X-Amz-Expires=3600&X-Amz-Credential=pub-internal-read%2F20181109%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=661ee51f1eaa25b84326ad9fd1305f7ebd673a43f9c53f43800b2857dd381d0b
## 2 https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801T000000/basic/NEON.D09.WOOD.DP1.10003.001.EML.20150701-20150705.20180418T200718Z.xml?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181109T200822Z&X-Amz-SignedHeaders=host&X-Amz-Expires=3600&X-Amz-Credential=pub-internal-read%2F20181109%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=b345fca9e24161f31af4c1710edd35e4e43c3dc8549ccb30c7dfd16ed09e9207
## 3 https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801T000000/basic/NEON.D09.WOOD.DP1.10003.001.readme.20180418T200718Z.txt?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181109T200822Z&X-Amz-SignedHeaders=host&X-Amz-Expires=3600&X-Amz-Credential=pub-internal-read%2F20181109%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=1d4cb18efddf91443b2bc5e1de655a4f12c0d995c79547b077d19b0df4102e05
## 4 https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801T000000/basic/NEON.D09.WOOD.DP1.10003.001.brd_countdata.2015-07.basic.20180418T200718Z.csv?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181109T200822Z&X-Amz-SignedHeaders=host&X-Amz-Expires=3600&X-Amz-Credential=pub-internal-read%2F20181109%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=1c8c2878ad0187483361fd2d169dfb76302a3709d7658e9d18342d4471b94bc5
## 5 https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801T000000/basic/NEON.D09.WOOD.DP0.10003.001.validation.20180418T200718Z.csv?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181109T200822Z&X-Amz-SignedHeaders=host&X-Amz-Expires=3600&X-Amz-Credential=pub-internal-read%2F20181109%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=a791a99e0dfbe315e786a1284968c2c05cb40f1bfdddc0fa7dc75f5fb7590b04
## 6 https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801T000000/basic/NEON.D09.WOOD.DP1.10003.001.2015-07.basic.20180418T200718Z.zip?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181109T200822Z&X-Amz-SignedHeaders=host&X-Amz-Expires=3600&X-Amz-Credential=pub-internal-read%2F20181109%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=9bb581e9a5bc63fbd8e32c0b2a98fb6c561efcc8c3a831fbf47a32f9afa9917b
## 7 https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801T000000/basic/NEON.D09.WOOD.DP1.10003.001.variables.20180418T200718Z.csv?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181109T200822Z&X-Amz-SignedHeaders=host&X-Amz-Expires=3600&X-Amz-Credential=pub-internal-read%2F20181109%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=4a9fc495125641b5c7cacc789f19a52a2ecfe6fa1d044b01556a666aed16f5b2
## 8 https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801T000000/expanded/NEON.D09.WOOD.DP1.10003.001.2015-07.expanded.20180418T200718Z.zip?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181109T200822Z&X-Amz-SignedHeaders=host&X-Amz-Expires=3600&X-Amz-Credential=pub-internal-read%2F20181109%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=a2948f87ae952d0cfd34de02b763088a1bafbbe1e50b5598a21c4fc4f7961a66
## 9 https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801T000000/expanded/NEON.D09.WOOD.DP1.10003.001.brd_perpoint.2015-07.expanded.20180418T200718Z.csv?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181109T200822Z&X-Amz-SignedHeaders=host&X-Amz-Expires=3599&X-Amz-Credential=pub-internal-read%2F20181109%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=ca8f845b1d567b9306f56e143455e674305c1acb02ea3291840c4244fc007050
## 10 https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801T000000/expanded/NEON.D09.WOOD.DP1.10003.001.variables.20180418T200718Z.csv?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181109T200822Z&X-Amz-SignedHeaders=host&X-Amz-Expires=3600&X-Amz-Credential=pub-internal-read%2F20181109%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=7f37ebbae3566f90b07f4979180e0dc465e3a430d84d80c7db28fe7f402bb644
## 11 https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801T000000/expanded/NEON.D09.WOOD.DP1.10003.001.EML.20150701-20150705.20180418T200718Z.xml?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181109T200822Z&X-Amz-SignedHeaders=host&X-Amz-Expires=3599&X-Amz-Credential=pub-internal-read%2F20181109%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=f9ebecc53f5a38bbfce17b945b284eb2f0462cbfeb75706971a6bd4de4412e2e
## 12 https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801T000000/expanded/NEON.D09.WOOD.DP1.10003.001.brd_countdata.2015-07.expanded.20180418T200718Z.csv?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181109T200822Z&X-Amz-SignedHeaders=host&X-Amz-Expires=3600&X-Amz-Credential=pub-internal-read%2F20181109%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=00046cd3e4c86bac70370457509f6a7c5e9c17e44618de9392353650837c92eb
## 13 https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801T000000/expanded/NEON.D09.WOOD.DP0.10003.001.validation.20180418T200718Z.csv?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181109T200822Z&X-Amz-SignedHeaders=host&X-Amz-Expires=3600&X-Amz-Credential=pub-internal-read%2F20181109%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=081681ce55c95bb957c1ea75a83a1ba09e67ce666d8986558cc072aabd7f416c
## 14 https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801T000000/expanded/NEON.Bird_Conservancy_of_the_Rockies.brd_personnel.csv?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181109T200822Z&X-Amz-SignedHeaders=host&X-Amz-Expires=3599&X-Amz-Credential=pub-internal-read%2F20181109%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=c4c92494e09de7c86e555c984b9ba4b38031cb7aaef61223dc95ca7f01723f83
## 15 https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801T000000/expanded/NEON.D09.WOOD.DP1.10003.001.readme.20180418T200718Z.txt?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181109T200822Z&X-Amz-SignedHeaders=host&X-Amz-Expires=3600&X-Amz-Credential=pub-internal-read%2F20181109%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=6c671432ccc8256ad6d4ecf9e7decdfe91dcb93d9dce1bae845536a3b406f9a8
## 16 https://neon-prod-pub-1.s3.data.neonscience.org/NEON.DOM.SITE.DP1.10003.001/PROV/WOOD/20150701T000000--20150801T000000/expanded/NEON.D09.WOOD.DP1.10003.001.brd_references.expanded.20180418T200718Z.csv?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181109T200822Z&X-Amz-SignedHeaders=host&X-Amz-Expires=3600&X-Amz-Credential=pub-internal-read%2F20181109%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=632f4c0885985eaaae5357471e790dc95f0cde379f2b0035086c6a9a032380f0
##
## $productCode
## [1] "DP1.10003.001"
##
## $siteCode
## [1] "WOOD"
##
## $month
## [1] "2015-07"
all the files available for birds at this site in this month order is not predictable! basic and expanded file for each type of data lots of different data types
bird.count <- read.delim(bird.files$data$files$url[intersect(
grep("countdata", bird.files$data$files$name),
grep("basic", bird.files$data$files$name))], sep = ",") #' want to get both BASIC and COUNT (only one file)
head(bird.count)## uid namedLocation domainID
## 1 05d116ad-1acd-4a74-ad00-0c0ad161f240 WOOD_013.birdGrid.brd D09
## 2 7f0ae987-3732-487b-9261-8da73de796a6 WOOD_013.birdGrid.brd D09
## 3 03159800-413e-4294-bdf9-9b4e2ac59230 WOOD_013.birdGrid.brd D09
## 4 71ad1c00-b8bb-4e95-8921-9311e7ac4b8a WOOD_013.birdGrid.brd D09
## 5 e9b73fde-c397-4017-8288-b1f98ed15205 WOOD_013.birdGrid.brd D09
## 6 1344ace6-7414-4531-b25d-998788d85e4d WOOD_013.birdGrid.brd D09
## siteID plotID plotType pointID startDate
## 1 WOOD WOOD_013 distributed B1 2015-07-01T10Z
## 2 WOOD WOOD_013 distributed B1 2015-07-01T10Z
## 3 WOOD WOOD_013 distributed B1 2015-07-01T10Z
## 4 WOOD WOOD_013 distributed B1 2015-07-01T10Z
## 5 WOOD WOOD_013 distributed B1 2015-07-01T10Z
## 6 WOOD WOOD_013 distributed B1 2015-07-01T10Z
## eventID pointCountMinute
## 1 WOOD_013.B1.2015-07-01T05:02-05:00[US/Central] 2
## 2 WOOD_013.B1.2015-07-01T05:02-05:00[US/Central] 1
## 3 WOOD_013.B1.2015-07-01T05:02-05:00[US/Central] 1
## 4 WOOD_013.B1.2015-07-01T05:02-05:00[US/Central] 1
## 5 WOOD_013.B1.2015-07-01T05:02-05:00[US/Central] 1
## 6 WOOD_013.B1.2015-07-01T05:02-05:00[US/Central] 3
## targetTaxaPresent taxonID scientificName taxonRank
## 1 Y MODO Zenaida macroura species
## 2 Y UNBL Icteridae sp. family
## 3 Y WEME Sturnella neglecta species
## 4 Y WEME Sturnella neglecta species
## 5 Y MAWR Cistothorus palustris species
## 6 Y BHCO Molothrus ater species
## vernacularName observerDistance detectionMethod visualConfirmation
## 1 Mourning Dove 152 singing No
## 2 131 singing No
## 3 Western Meadowlark 251 singing No
## 4 Western Meadowlark 217 singing No
## 5 Marsh Wren 62 singing No
## 6 Brown-headed Cowbird 136 calling Yes
## sexOrAge clusterSize clusterCode identifiedBy
## 1 Unknown 1 6vhK5g7y5oE=
## 2 Unknown 1 6vhK5g7y5oE=
## 3 Unknown 1 6vhK5g7y5oE=
## 4 Unknown 1 6vhK5g7y5oE=
## 5 Unknown 1 6vhK5g7y5oE=
## 6 Unknown 3 6vhK5g7y5oE=
taxon endpoint-------------------####
loon.req <- GET("http://data.neonscience.org/api/v0/taxonomy/?family=Gaviidae") #'query to search
loon.req## Response [http://data.neonscience.org/api/v0/taxonomy/?family=Gaviidae]
## Date: 2018-11-09 20:08
## Status: 200
## Content-Type: application/json;charset=UTF-8
## Size: 2.28 kB
loon.list <- fromJSON(content(loon.req, as = "text"))
loon.list## $count
## [1] 5
##
## $total
## [1] 5
##
## $prev
## NULL
##
## $`next`
## NULL
##
## $data
## taxonTypeCode taxonID acceptedTaxonID dwc:scientificName
## 1 BIRD ARLO ARLO Gavia arctica
## 2 BIRD COLO COLO Gavia immer
## 3 BIRD PALO PALO Gavia pacifica
## 4 BIRD RTLO RTLO Gavia stellata
## 5 BIRD YBLO YBLO Gavia adamsii
## dwc:scientificNameAuthorship dwc:taxonRank dwc:vernacularName
## 1 (Linnaeus) species Arctic Loon
## 2 (Brunnich) species Common Loon
## 3 (Lawrence) species Pacific Loon
## 4 (Pontoppidan) species Red-throated Loon
## 5 (G. R. Gray) species Yellow-billed Loon
## dwc:nameAccordingToID dwc:kingdom dwc:phylum dwc:class dwc:order
## 1 doi: 10.1642/AUK-15-73.1 Animalia Chordata Aves Gaviiformes
## 2 doi: 10.1642/AUK-15-73.1 Animalia Chordata Aves Gaviiformes
## 3 doi: 10.1642/AUK-15-73.1 Animalia Chordata Aves Gaviiformes
## 4 doi: 10.1642/AUK-15-73.1 Animalia Chordata Aves Gaviiformes
## 5 doi: 10.1642/AUK-15-73.1 Animalia Chordata Aves Gaviiformes
## dwc:family dwc:genus gbif:subspecies gbif:variety
## 1 Gaviidae Gavia NA NA
## 2 Gaviidae Gavia NA NA
## 3 Gaviidae Gavia NA NA
## 4 Gaviidae Gavia NA NA
## 5 Gaviidae Gavia NA NA