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> python panGraphViewer/panGraphViewerWeb/pangraphviewer/gfa2rGFA.py -in_gfa chnVSjapVSkorVSauVSusa.PanSN-1-19.fasta.gz.gfaffix.unchop.Ygs.view.gfa -out_rgfa chnVSjapVSkorVSauVSusa.PanSN-1-19.fasta.gz.gfaffix.unchop.Ygs.view.rgfa
2024-08-30 12:36:12,345 [INFO] The input file is in GFA1 format and we are converting it to rGFA. Please wait!
Traceback (most recent call last):
File "/mnt/weka/scratch/waterhouse_team/gfa/panGraphViewer/panGraphViewerWeb/pangraphviewer/gfa2rGFA.py", line 241, in <module>
run.convert()
File "/mnt/weka/scratch/waterhouse_team/gfa/panGraphViewer/panGraphViewerWeb/pangraphviewer/gfa2rGFA.py", line 139, in convert
S[newId] = {'seq':rev_comp(S[nodeId]['seq']),'len':S[nodeId]['len']}
KeyError: '1779060'
What did I miss?
The text was updated successfully, but these errors were encountered:
Hi
I failed to convert GFA (created by nf-core/pangenome) to rGFA with
gfa2rGFA.py
script from this project.What did I miss?
The text was updated successfully, but these errors were encountered: