Installation of eulerpi fails because of amici, what can I do about it?

[shoepfl]

Amici is used for models written in the Systems Biology Markup Language (SBML). It needs SWIG, a CBLAS compatible BLAS library, a C++ and C compiler.

Further hdf5 can be used for parallelization.

[shoepfl]

The following instruction can be used to install amici in an virtual conda environment:

conda create --name

conda activate

conda install gcc_linux-64 gxx_linux-64 swig blas libopenblas
conda install -c conda-forge blas openblas

export CONDA_DIR=$CONDA_PREFIX

conda install hdf5
conda install pip

pip install --no-cache amici

afterwards eulerpi can be installed via pip install eulerpi.

[shoepfl]

Amici is not needed for users that do not work with SBML models.

You can install the eulerpi package without its dependencies via pip install eulerpi --no-deps and afterward only install the dependencies you need.

[kaiserls]

Installation of eulerpi without amici/sbml is now, since version 0.6.0, the default: pip install eulerpi
For sbml support you can execute pip install eulerpi[sbml]