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TypeError: create.<locals>.Validator.__init__() got an unexpected keyword argument 'registry' #1807

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KumoLiu opened this issue Sep 2, 2024 · 1 comment
Open

TypeError: create.<locals>.Validator.__init__() got an unexpected keyword argument 'registry' #1807

KumoLiu opened this issue Sep 2, 2024 · 1 comment
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@KumoLiu
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KumoLiu commented Sep 2, 2024 

[2024-09-01T16:26:05.898Z] Running ./pathology/tumor_detection/ignite/profiling_camelyon_pipeline.ipynb
[2024-09-01T16:26:05.898Z] Checking PEP8 compliance...
[2024-09-01T16:26:06.154Z] Traceback (most recent call last):
[2024-09-01T16:26:06.154Z]   File "/usr/local/bin/jupytext", line 5, in <module>
[2024-09-01T16:26:06.154Z]     from jupytext.cli import jupytext
[2024-09-01T16:26:06.154Z]   File "/usr/local/lib/python3.10/dist-packages/jupytext/__init__.py", line 9, in <module>
[2024-09-01T16:26:06.154Z]     from .contentsmanager import build_jupytext_contents_manager_class
[2024-09-01T16:26:06.154Z]   File "/usr/local/lib/python3.10/dist-packages/jupytext/contentsmanager.py", line 616, in <module>
[2024-09-01T16:26:06.154Z]     from jupyter_server.services.contents.largefilemanager import LargeFileManager
[2024-09-01T16:26:06.154Z]   File "/usr/local/lib/python3.10/dist-packages/jupyter_server/services/contents/largefilemanager.py", line 7, in <module>
[2024-09-01T16:26:06.154Z]     from jupyter_server.services.contents.filemanager import (
[2024-09-01T16:26:06.154Z]   File "/usr/local/lib/python3.10/dist-packages/jupyter_server/services/contents/filemanager.py", line 36, in <module>
[2024-09-01T16:26:06.154Z]     from .manager import AsyncContentsManager, ContentsManager, copy_pat
[2024-09-01T16:26:06.154Z]   File "/usr/local/lib/python3.10/dist-packages/jupyter_server/services/contents/manager.py", line 16, in <module>
[2024-09-01T16:26:06.154Z]     from jupyter_events import EventLogger
[2024-09-01T16:26:06.154Z]   File "/usr/local/lib/python3.10/dist-packages/jupyter_events/__init__.py", line 3, in <module>
[2024-09-01T16:26:06.154Z]     from .logger import EVENTS_METADATA_VERSION, EventLogger
[2024-09-01T16:26:06.154Z]   File "/usr/local/lib/python3.10/dist-packages/jupyter_events/logger.py", line 19, in <module>
[2024-09-01T16:26:06.154Z]     from .schema import SchemaType
[2024-09-01T16:26:06.154Z]   File "/usr/local/lib/python3.10/dist-packages/jupyter_events/schema.py", line 18, in <module>
[2024-09-01T16:26:06.154Z]     from .validators import draft7_format_checker, validate_schema
[2024-09-01T16:26:06.154Z]   File "/usr/local/lib/python3.10/dist-packages/jupyter_events/validators.py", line 44, in <module>
[2024-09-01T16:26:06.154Z]     JUPYTER_EVENTS_SCHEMA_VALIDATOR = Draft7Validator(
[2024-09-01T16:26:06.154Z] TypeError: create.<locals>.Validator.__init__() got an unexpected keyword argument 'registry'
@KumoLiu
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KumoLiu commented Sep 2, 2024

The issue occurs after updated the base image to version 24.08, the jupytext version upgraded from 1.16.1 to 1.16.4.

KumoLiu added a commit to KumoLiu/tutorials that referenced this issue Sep 2, 2024
@KumoLiu
workaround for Project-MONAI#1807
e01f3fe 
Signed-off-by: YunLiu <[email protected]>
@KumoLiu KumoLiu mentioned this issue Sep 2, 2024
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KumoLiu added a commit that referenced this issue Sep 2, 2024
@KumoLiu
Jupytext (#1808)
e69c10d 
Workaround of #1807

### Description

- set a version constraint on jupytext

- remove xformer in maisi 

### Checks
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [ ] Avoid including large-size files in the PR.
- [ ] Clean up long text outputs from code cells in the notebook.
- [ ] For security purposes, please check the contents and remove any
sensitive info such as user names and private key.
- [ ] Ensure (1) hyperlinks and markdown anchors are working (2) use
relative paths for tutorial repo files (3) put figure and graphs in the
`./figure` folder
- [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`

---------

Signed-off-by: YunLiu <[email protected]>
@KumoLiu KumoLiu added the bug Something isn't working label Sep 9, 2024
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