From aacb8d1c11782481af2a2d66442cd74338c2c74f Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 10 Jul 2023 15:20:07 +0000 Subject: [PATCH] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- modules/GDS_dataset.ipynb | 23 +++++++++++++---------- 1 file changed, 13 insertions(+), 10 deletions(-) diff --git a/modules/GDS_dataset.ipynb b/modules/GDS_dataset.ipynb index 0522925b6..496761df7 100644 --- a/modules/GDS_dataset.ipynb +++ b/modules/GDS_dataset.ipynb @@ -155,18 +155,18 @@ " hash_func: Callable[..., bytes] = pickle_hashing,\n", " hash_transform: Callable[..., bytes] | None = None,\n", " reset_ops_id: bool = True,\n", - " device : int = None,\n", + " device: int = None,\n", " **kwargs: Any,\n", " ) -> None:\n", " super().__init__(\n", " data=data,\n", " transform=transform,\n", " cache_dir=cache_dir,\n", - " hash_func = hash_func,\n", - " hash_transform = hash_transform,\n", - " reset_ops_id = reset_ops_id,\n", - " **kwargs\n", - " )\n", + " hash_func=hash_func,\n", + " hash_transform=hash_transform,\n", + " reset_ops_id=reset_ops_id,\n", + " **kwargs,\n", + " )\n", " self.device = device\n", " self.shape_dict = {}\n", "\n", @@ -238,9 +238,7 @@ "source": [ "sample_url = \"https://github.com/Project-MONAI/MONAI-extra-test-data/releases\"\n", "sample_url += \"/download/0.8.1/totalSegmentator_mergedLabel_samples.zip\"\n", - "monai.apps.download_and_extract(\n", - " sample_url, output_dir=root_dir, filepath=\"samples.zip\"\n", - ")\n", + "monai.apps.download_and_extract(sample_url, output_dir=root_dir, filepath=\"samples.zip\")\n", "\n", "base_name = os.path.join(root_dir, \"totalSegmentator_mergedLabel_samples\")\n", "input_data = []\n", @@ -289,7 +287,12 @@ " mt.EnsureTypeD(keys=(\"image\", \"label\"), device=device),\n", " mt.SpacingD(keys=(\"image\", \"label\"), pixdim=1.5),\n", " mt.RandRotateD(\n", - " keys=(\"image\", \"label\"), prob=1.0, range_x=0.1, range_y=0.1, range_z=0.3, mode=(\"bilinear\", \"nearest\"),\n", + " keys=(\"image\", \"label\"),\n", + " prob=1.0,\n", + " range_x=0.1,\n", + " range_y=0.1,\n", + " range_z=0.3,\n", + " mode=(\"bilinear\", \"nearest\"),\n", " ),\n", " mt.RandZoomD(keys=(\"image\", \"label\"), prob=1.0, min_zoom=0.8, max_zoom=1.2, mode=(\"trilinear\", \"nearest\")),\n", " mt.ResizeWithPadOrCropD(keys=(\"image\", \"label\"), spatial_size=(200, 210, 220)),\n",