pythonapp-min.yml

# Jenkinsfile.monai-premerge
name: premerge-min

on:
  # quick tests for pull requests and the releasing branches
  push:
    branches:
      - dev
      - main
      - releasing/*
  pull_request:
    head_ref-ignore:
      - dev

concurrency:
  # automatically cancel the previously triggered workflows when there's a newer version
  group: build-min-${{ github.event.pull_request.number || github.ref }}
  cancel-in-progress: true

jobs:
  # caching of these jobs:
  #   - docker-py3-pip- (shared)
  #   - ubuntu py37 pip-
  #   - os-latest-pip- (shared)
  min-dep-os:  # min dependencies installed tests for different OS
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [windows-latest, macOS-latest, ubuntu-latest]
    timeout-minutes: 40
    steps:
    - uses: actions/checkout@v4
    - name: Set up Python 3.9
      uses: actions/setup-python@v5
      with:
        python-version: '3.9'
    - name: Prepare pip wheel
      run: |
        which python
        python -m pip install --upgrade pip wheel
    - name: cache weekly timestamp
      id: pip-cache
      run: |
        echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
        echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
      shell: bash
    - name: cache for pip
      uses: actions/cache@v4
      id: cache
      with:
        path: ${{ steps.pip-cache.outputs.dir }}
        key: ${{ matrix.os }}-latest-pip-${{ steps.pip-cache.outputs.datew }}
    - name: Install the dependencies
      run: |
        # min. requirements
        python -m pip install torch --index-url https://download.pytorch.org/whl/cpu
        python -m pip install -r requirements-min.txt
        python -m pip list
        BUILD_MONAI=0 python setup.py develop  # no compile of extensions
      shell: bash
    - name: Run quick tests (CPU ${{ runner.os }})
      run: |
        python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))'
        python -c "import monai; monai.config.print_config()"
        ./runtests.sh --min
      shell: bash
      env:
        QUICKTEST: True
        NGC_API_KEY: ${{ secrets.NGC_API_KEY }}
        NGC_ORG: ${{ secrets.NGC_ORG }}
        NGC_TEAM: ${{ secrets.NGC_TEAM }}

  min-dep-py3:  # min dependencies installed tests for different python
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ['3.9', '3.10', '3.11', '3.12']
    timeout-minutes: 40
    steps:
    - uses: actions/checkout@v4
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v5
      with:
        python-version: ${{ matrix.python-version }}
    - name: Prepare pip wheel
      run: |
        which python
        python -m pip install --user --upgrade pip setuptools wheel
    - name: cache weekly timestamp
      id: pip-cache
      run: |
        echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
        echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
      shell: bash
    - name: cache for pip
      uses: actions/cache@v4
      id: cache
      with:
        path: ${{ steps.pip-cache.outputs.dir }}
        key: ubuntu-latest-latest-pip-${{ steps.pip-cache.outputs.datew }}
    - name: Install the dependencies
      run: |
        # min. requirements
        python -m pip install torch --extra-index-url https://download.pytorch.org/whl/cpu
        python -m pip install -r requirements-min.txt
        python -m pip list
        BUILD_MONAI=0 python setup.py develop  # no compile of extensions
      shell: bash
    - name: Run quick tests (CPU ${{ runner.os }})
      run: |
        python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))'
        python -c "import monai; monai.config.print_config()"
        ./runtests.sh --min
      env:
        QUICKTEST: True
        NGC_API_KEY: ${{ secrets.NGC_API_KEY }}
        NGC_ORG: ${{ secrets.NGC_ORG }}
        NGC_TEAM: ${{ secrets.NGC_TEAM }}

  min-dep-pytorch:  # min dependencies installed tests for different pytorch
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        pytorch-version: ['1.10.2', '1.11.0', '1.12.1', '1.13', '2.0.1', 'latest']
    timeout-minutes: 40
    steps:
    - uses: actions/checkout@v4
    - name: Set up Python 3.9
      uses: actions/setup-python@v5
      with:
        python-version: '3.9'
    - name: Prepare pip wheel
      run: |
        which python
        python -m pip install --user --upgrade pip setuptools wheel
    - name: cache weekly timestamp
      id: pip-cache
      run: |
        echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
        echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
      shell: bash
    - name: cache for pip
      uses: actions/cache@v4
      id: cache
      with:
        path: ${{ steps.pip-cache.outputs.dir }}
        key: ubuntu-latest-latest-pip-${{ steps.pip-cache.outputs.datew }}
    - name: Install the dependencies
      run: |
        # min. requirements
        if [ ${{ matrix.pytorch-version }} == "latest" ]; then
          python -m pip install torch
        else
          python -m pip install torch==${{ matrix.pytorch-version }}
        fi
        python -m pip install -r requirements-min.txt
        python -m pip list
        BUILD_MONAI=0 python setup.py develop  # no compile of extensions
      shell: bash
    - name: Run quick tests (pytorch ${{ matrix.pytorch-version }})
      run: |
        python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))'
        python -c "import monai; monai.config.print_config()"
        ./runtests.sh --min
      env:
        QUICKTEST: True
        NGC_API_KEY: ${{ secrets.NGC_API_KEY }}
        NGC_ORG: ${{ secrets.NGC_ORG }}
        NGC_TEAM: ${{ secrets.NGC_TEAM }}