From 58b1ee445e5686d0cb03376295971d2c11b0d24f Mon Sep 17 00:00:00 2001 From: Chris Cooper-Jones Date: Sat, 27 Jan 2024 21:03:28 +0000 Subject: [PATCH 1/2] update pmc style guidelines --- schema/Makefile | 8 +- schema/nlm-stylechecker/nlm-stylechecker.xsl | 454 +- schema/nlm-stylechecker/style-reporter.xsl | 65 +- .../stylecheck-helper-templates.xsl | 787 +- .../stylecheck-match-templates.xsl | 929 +- .../stylecheck-named-tests.xsl | 11896 +++++++++------- 6 files changed, 8925 insertions(+), 5214 deletions(-) diff --git a/schema/Makefile b/schema/Makefile index 755a19f..ecff493 100644 --- a/schema/Makefile +++ b/schema/Makefile @@ -142,12 +142,12 @@ doaj: # NLM PMC Style Checker -nlm-stylechecker: | $(DOWNLOADS)/nlm-style-5.12.tar.gz +nlm-stylechecker: | $(DOWNLOADS)/nlm-style-5.39.tar.gz mkdir -p nlm-stylechecker - tar xvz -C nlm-stylechecker -f $(DOWNLOADS)/nlm-style-5.12.tar.gz + tar xvz -C nlm-stylechecker -f $(DOWNLOADS)/nlm-style-5.39.tar.gz -$(DOWNLOADS)/nlm-style-5.12.tar.gz: | $(DOWNLOADS) - wget -c -P $(DOWNLOADS) http://www.ncbi.nlm.nih.gov/pmc/assets/nlm-style-5.12.tar.gz +$(DOWNLOADS)/nlm-style-5.39.tar.gz: | $(DOWNLOADS) + wget -c -P $(DOWNLOADS) https://www.ncbi.nlm.nih.gov/core/assets/pmc/files/nlm-style-5.39.tar.gz # NLM DTDs # http://www.ncbi.nlm.nih.gov/data_specs/dtd/ diff --git a/schema/nlm-stylechecker/nlm-stylechecker.xsl b/schema/nlm-stylechecker/nlm-stylechecker.xsl index 11a9b60..d745a4b 100644 --- a/schema/nlm-stylechecker/nlm-stylechecker.xsl +++ b/schema/nlm-stylechecker/nlm-stylechecker.xsl @@ -26,19 +26,19 @@ --> + + + - + + # + + + diff --git a/schema/nlm-stylechecker/stylecheck-helper-templates.xsl b/schema/nlm-stylechecker/stylecheck-helper-templates.xsl index df828b0..7d690ec 100644 --- a/schema/nlm-stylechecker/stylecheck-helper-templates.xsl +++ b/schema/nlm-stylechecker/stylecheck-helper-templates.xsl @@ -5,6 +5,7 @@ xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:mml="http://www.w3.org/1998/Math/MathML" + xmlns:ali="http://www.niso.org/schemas/ali/1.0/" version="1.0"> @@ -73,7 +74,7 @@ - + @@ -110,8 +111,17 @@ - - : + + + + + + + + + : + + ( @@ -144,13 +154,13 @@ - + - + - + @@ -182,7 +192,7 @@ - + @@ -221,16 +231,21 @@ --> - + + + + + + + + or local-name() = 'tex-math'])"> - + @@ -244,19 +259,19 @@ - + because it is done in other place. -/-> - + --> - + @@ -392,5 +407,739 @@ + + (context: + + + + [@id=" + + "] + + + + + + ) + + + + + + + + + + [] + + + + + + /error + + + + + + + + + + + + + + diff --git a/schema/nlm-stylechecker/stylecheck-match-templates.xsl b/schema/nlm-stylechecker/stylecheck-match-templates.xsl index 586b03b..75609ce 100644 --- a/schema/nlm-stylechecker/stylecheck-match-templates.xsl +++ b/schema/nlm-stylechecker/stylecheck-match-templates.xsl @@ -4,6 +4,7 @@ xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:mml="http://www.w3.org/1998/Math/MathML" + xmlns:ali="http://www.niso.org/schemas/ali/1.0/" version="1.0"> @@ -14,7 +15,7 @@ named template that implements the logic of the style test. This has been done because multiple elements may need to apply the same test. Once tests have been applied, each template then copies the current - context to the result true by calling a special "output" mode. + context to the result tree by calling a special "output" mode. --> @@ -22,10 +23,12 @@ + @@ -37,9 +40,10 @@ first abstract does not require an abstract type, but all the rest do. 3) cannot be empty - 4) Title only allowed if it is different from + 4) Title only allowed if it is different from "Abstract" - 5) If manuscript, do not allow attributes. + 5) If manuscript, do not allow attributes. + 6) If book, length cannot exceed 9900 characters. --> @@ -56,6 +60,9 @@ --> + + + @@ -64,11 +71,14 @@ 1) should not appear in body 2) cannot be empty 3) If manuscript, must have appropriate ID + 4) If book and a main unit, must have title and ID --> + + @@ -99,6 +109,18 @@ + + + + + + + + + + + @@ -213,7 +237,9 @@ 1) must have pub-id-type and must be correct value 2) element must have content 3) If contains doi, must be right format - 4) If pub-id-type is "manuscript" the article must include the PI + 4) If pub-id-type is "manuscript" the article must include the PI + 5) If @custom-type is present, value of @pub-id-type must be "custom"; + if @pub-id-type="custom", @custom-type must be present and non-empty --> @@ -221,19 +247,26 @@ - + + - - - - - - - + + + + + + + + + + + + + - + + + + + + + + + + + + + + + + @@ -306,9 +363,21 @@ --> + - + + + + + + + + + + + + @@ -363,18 +437,22 @@ + + @@ -397,8 +475,54 @@ + + + + + + + + + + book-id-type + pub-id-type + + + + + pub-id-type attribute check + book-id-type attribute check + + + + + + + + + + - + + + + + + + + + + + + - - - - - - - - - - - - + - + + + + + + + + + + + + + + + + + - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - - - - - - - - + + @@ -505,9 +659,11 @@ + @@ -531,13 +687,30 @@ + + + + + + + + + + + + + + @@ -547,12 +720,14 @@ 1) xlink:href cannot be empty 2) cannot be empty 3) collab-content-check + 4) check xmlns:xlink --> + @@ -560,7 +735,7 @@ + 2) collab-alternatives-content-check--> @@ -604,12 +779,13 @@ Tests: 1) cannot be empty + 2) check xmlns:xlink --> - + @@ -647,6 +823,7 @@ 2) cannot be empty 3) no xlink attributes + 4) xlmns:xlink check --> @@ -664,12 +841,10 @@ - - - + @@ -697,9 +872,10 @@ - + @@ -718,6 +894,20 @@ + + + + + + + + + + + + + + + + + + + + + + @@ -824,18 +1031,13 @@ - - - - - + @@ -846,16 +1048,19 @@ Tests: 1) id attribute required 2) Should not include non-formatting and - mml:math characters + mml:math characters 3) id atttribute content must be of correct form - 4) content should be one of - -content in JATS emphasis elements and PCDATA, - - one mml:math, or - - one tex-math. - If more than one representation of the formula - is included, they must be tagged as alternatives - with the element (3.0+) or @alternate-form-of (2.3). --> + 4) content should be one of + - content in JATS emphasis elements and PCDATA, + - one mml:math, or + - one tex-math. + If more than one representation of the formula + is included, they must be tagged as alternatives + with the element (3.0+) or @alternate-form-of (2.3). + 5) The elements array, code, and preformat + are not allowed as children of disp-formula + --> @@ -867,6 +1072,8 @@ + + @@ -875,27 +1082,54 @@ + + - + + + + + + + + + + + - + - - + + + + + + + + + + + @@ -926,11 +1165,14 @@ - + + + - + @@ -938,8 +1180,6 @@ @@ -949,26 +1189,8 @@ - - - - - - - - - - - - - + + @@ -992,14 +1214,7 @@ - - - - - - - - + @@ -1012,7 +1227,7 @@ --> - + @@ -1032,35 +1247,33 @@ - - - - - - - + + + + - - - - + + + + + + @@ -1073,7 +1286,6 @@ - @@ -1081,10 +1293,13 @@ + + @@ -1092,12 +1307,13 @@ - + @@ -1133,13 +1349,27 @@ + + - - + + + + + + + + + + + @@ -1167,11 +1399,13 @@ + @@ -1191,11 +1425,14 @@ + + @@ -1204,12 +1441,13 @@ + @@ -1297,26 +1535,46 @@ + - + + + + + + + + + + - + + + + + + + @@ -1324,10 +1582,12 @@ + @@ -1337,6 +1597,7 @@ 1) inside journal-meta, must have right form and required attributes 2) restrict pub-type values + 3) restrict publication-format values --> @@ -1351,6 +1612,10 @@ + + + + @@ -1375,6 +1640,8 @@ @@ -1383,8 +1650,11 @@ + + + @@ -1466,6 +1736,8 @@ @@ -1473,6 +1745,10 @@ + + + + @@ -1490,8 +1766,7 @@ @@ -1501,21 +1776,9 @@ - - - - - - - - - + + + @@ -1523,31 +1786,47 @@ - - - - - - + + + + + + + + + + + + + + + + + + - + @@ -1555,11 +1834,14 @@ + + @@ -1588,6 +1870,7 @@ + @@ -1607,7 +1890,7 @@ - + @@ -1618,6 +1901,7 @@ + @@ -1689,6 +1973,7 @@ + @@ -1770,6 +2055,30 @@ + + + + + + + + + + + + + + + + + + + + + + + + @@ -1861,13 +2167,7 @@ - - - - - - - + @@ -1892,8 +2192,18 @@ --> - - + + + + + + + + + + @@ -1922,6 +2233,8 @@ + + @@ -2019,12 +2332,20 @@ + + + + + + - + @@ -2063,19 +2384,11 @@ - - - - + @@ -2115,11 +2428,13 @@ + @@ -2150,8 +2465,12 @@ @@ -2162,9 +2481,22 @@ - + + + + + + + + + + + + + + @@ -2172,11 +2504,17 @@ + + + + + @@ -2257,10 +2595,13 @@ + + @@ -2273,6 +2614,7 @@ 4) 5) xlink:href cannot be empty 6) if @xlink:href is a doi, @ext-link-type must be "doi" + 7) check xmlns:xlink --> @@ -2305,7 +2647,9 @@ - + + + @@ -2313,6 +2657,7 @@ @@ -2340,16 +2685,14 @@ + - - - - - - - < - - > should not be used in a manuscript - - - - - - - - - - - response-type - - - article-type - - - - - - - - - - - - + + + + + + + + + response-type + + + article-type + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - + @@ -2457,6 +2813,8 @@ + + @@ -2465,12 +2823,12 @@ - + @@ -2522,10 +2880,12 @@ + @@ -2648,7 +3008,7 @@ - + date content check @@ -2800,12 +3160,15 @@ + + @@ -2823,10 +3186,20 @@ - - + + + + + + + + + + + @@ -2853,29 +3229,16 @@ + + - - - - - - - - - - + @@ -2894,21 +3257,12 @@ - - - - - - - - + @@ -2945,6 +3299,19 @@ + + + + + + + + + + + @@ -3004,6 +3371,19 @@ + + + + + + + + + + + + + + + @@ -3265,10 +3650,12 @@ + @@ -3322,18 +3709,30 @@ - - - - - - + + + + + + + + + + + + + + + - + diff --git a/schema/nlm-stylechecker/stylecheck-named-tests.xsl b/schema/nlm-stylechecker/stylecheck-named-tests.xsl index 0532f63..ee921a4 100644 --- a/schema/nlm-stylechecker/stylecheck-named-tests.xsl +++ b/schema/nlm-stylechecker/stylecheck-named-tests.xsl @@ -1,29 +1,27 @@ - - - - - + xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" + xmlns:mml="http://www.w3.org/1998/Math/MathML" + xmlns:ali="http://www.niso.org/schemas/ali/1.0/" version="1.0"> + + + + - - - sections within abstract should not have @sec-type. - - + + + sections within abstract should not have @sec-type. + + @@ -38,8 +36,8 @@ KP 2015-11-03 Context: article-categories --> - - + - + - - - article-meta content check - - The following elements should not appear inside <article-meta>: <conference>, <ext-link>, <email>, <elocation-id>, <fpage>, <history>, <issue>, <issue-title>, <issue-id>, <lpage>, <page-range>, <product>, <supplement>, <uri>, <volume>, <volume-id> - - - + + + article-meta content + check + + The following elements should not appear inside <article-meta>: <conference>, <ext-link>, <email>, <elocation-id>, <fpage>, <history>, <issue>, <issue-title>, <issue-id>, <lpage>, <page-range>, <product>, <supplement>, <uri>, <volume>, <volume-id> + + + + + + + article-meta content + check + + Only corrections, retractions, addenda, expressions-of-concern, and article-commentary may contain <related-article>. + + + - - - article-meta content check - - Only corrections, retractions, addenda, expressions-of-concern, and article-commentary may contain <related-article>. - - - - - + - - + - - - + - - - - trans-title check - - <trans-title>should only be used to carry an English title in a non-English manuscript. - - - - + + + + trans-title check + + <trans-title>should only be used to carry an English title in a non-English manuscript. + + + + - + - - - manuscript article-id check - - Manuscript content must have an <article-id> with @pub-id-type='manuscript'. - - - + + + manuscript article-id + check + + Manuscript content must have an <article-id> with @pub-id-type='manuscript'. + + + @@ -162,15 +170,16 @@ back should not contain title or notes Context: back --> - + - back content check + back content + check <back> should not contain <title> - + @@ -186,84 +195,101 @@ article element. Context: back --> - + - - + + - display objects test - - <back> must contain a <sec> with sec-type attribute set to 'display-objects' to contain floating figures and tables - - - + display objects check + + <back> must contain a <sec> with sec-type attribute set to 'display-objects' to contain floating figures and tables + + + - - + + - display objects test + display objects check <back> must no longer contain a <sec> with sec-type attribute set to 'display-objects' to contain floating figures and tables. They must now be contained in floats-group. - - + + - - - - - - - floating objects test - - <article> must contain a <floats-group> to contain floating figures and tables. - - - - - - - - - + + + + + + + floating objects check + + <article> must contain a <floats-group> to contain floating figures and tables. + + + + + + + + + - - - - - - - - - license in footnote test - - License information must be included in <license> in <permissions>, not in a footnote. - - - - - - warning - license in footnote test - - License information must be included in <license> in <permissions>, not in a footnote. - - - - - - - - - - + + + + + + + + + + warning + license in footnote check + + License information must be included in <license> in <permissions>, not in a footnote. + + + + + + warning + license in footnote check + + License information must be included in <license> in <permissions>, not in a footnote. + + + + + + + + + + - + - + - + <contrib> must contain a contrib-type attribute - + - + - + contrib-type attribute must be set to either 'author' or 'editor' - + - + <contrib> should not contain an id attribute - + - + <contrib> should not contain an rid attribute - + - + - + - + - + - + <contrib> should not contain any of the following elements: <address>, <author-comment>, <bio>, or <uri> that does not have @content-type="orcid". - + @@ -365,16 +393,16 @@ or a separate aff for each contrib. Context: contrib-group --> - + - + - + <aff> in <contrib-group> should apply to all <contrib> elements. - + @@ -386,19 +414,21 @@ and/or aff Context: contrib-group --> - + - - + + - + <contrib-group> should only contain <contrib> and/or <aff> elements. - + - + @@ -409,15 +439,15 @@ chem-struct, graphic Context: disp-formula --> - + - + <disp-formula> cannot contain <inline-graphic>, <tex-math>, <array>, or <chem-struct> elements - + @@ -428,27 +458,42 @@ Don't allow notes element in front. Context: front --> - + - + + + + + + + + + + - - + + <front> should not contain a <notes> element unless it is a disclaimer or it contains related article information. Place all notes inside <author-notes> or move to a <fn-group> in <back>. - - - - - + + + + + - - - - - - + + + + + + - + - + - - + + - - - warning - manuscript ProcessingInstruction check + + + warning + manuscript + ProcessingInstruction check <?nihms?> processing instruction is no longer fashionable. Use <?properties manuscript?> with the input stream identified in <?origin ?> @@ -485,61 +532,85 @@ - manuscript ProcessingInstruction check + manuscript + ProcessingInstruction check <?properties manuscript?> must be supplied in the manuscript. - - - - + + + + - manuscript ProcessingInstruction check + manuscript + ProcessingInstruction check only one <?origin?> PI may be supplied. It must correspond to the input streams 'nihpa', 'ukpmcpa', 'capmc', 'hal', 'hrams', 'nasapa', or 'hhmipa'. - - - - + + + + - - + + - manuscript ProcessingInstruction check + manuscript + ProcessingInstruction check - <?origin?> PI must be supplied. It must correspond to the input streams 'nihpa', 'ukpmcpa', 'capmc', 'hal', 'hrams', or 'hhmipa' like <?origin ukpmcpa?>. + <?origin?> PI must be supplied. It must correspond to the input streams 'nihpa', 'ukpmcpa', 'capmc', 'hal', 'hrams', 'hhmipa', or 'dhspa' like <?origin ukpmcpa?>. - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - manuscript ProcessingInstruction check + manuscript + ProcessingInstruction check - <?origin - - ?> is not an acceptable input stream. It must be one of 'nihpa', 'hhspa', 'ukpmcpa', 'capmc', 'hrams', 'hal', 'asms', 'aspa', 'vapa', 'nistpa', 'ahrqpa' or 'hhmipa'. + <?origin + + ?> is not an acceptable input stream. It must be one of 'nihpa', 'hhspa', 'ukpmcpa', 'capmc', 'hrams', 'hal', 'asms', 'aspa', 'vapa', 'nistpa', 'ahrqpa', 'hhmipa', 'dhspa', or 'gatesmanu'. - - - + + + @@ -559,84 +630,96 @@ attribute. Context: article-categories --> - + - - - - - - - - - + + + - - - - - + + + - - - - - - - subject-group checking - - <article-categories> must contain a single default <subj-group> where the subj-group-type attribute is 'heading' and the subject content is 'Article' - - - - - - - - - - - - subject-group checking + + + + + + + subject-group + check + + <article-categories> must contain a single default <subj-group> where the subj-group-type attribute is 'heading' and the subject content is 'Article' + + + + + + + + + + + + subject-group + check - <subject> cannot contain emphasis elements + <subject> cannot contain emphasis elements - - - + + + - - + + - - - - - - - - extended data checking - - Manuscripts with Extended Data figures or tables must have an Extended Data section at the end of the body (but before any supplementary-material section). - - - - - - - - - + + + + + + + + extended data + check + + Manuscripts with Extended Data figures or tables must have an Extended Data section at the end of the body (but before any supplementary-material section). + + + + + + + + + - - - - - - - - - subject-group checking - - <article-categories> must contain a <subj-group> with subj-group-type attribute 'heading'. - - - - - - - - - - - - - - + + + + + + + + subject-group + check + + <article-categories> must contain a <subj-group> with subj-group-type attribute 'heading'. + + + + + + + + + + + + + + + - - - + - - - - - - abstract-sec-test - - abstract contains multiple nested sections; check that the structure is correct. - - - - - - - + + + + + + abstract-section check + + abstract contains multiple nested sections; check that the structure is correct. + + + + + + - + + - + - + - abstract title check + abstract title + check <title> is only needed if it is not 'Abstract'. - - - - - - error - - - warning - - - - + + + + + + error + + + warning + + + + - - - - + - - - - - - - - - must contain more than 1 child element. - - - - - - - + + + + + + + + + must contain more than 1 child element + + ). + + + + + + + - - - - - - aff check - - - Affiliations must not contain xrefs to affiliations. - - - - - + + + + + + aff check + + + Affiliations must not contain xrefs to affiliations. + + + + - - + - - - - - - - - - - - - - - aff-alternatives check - - - Elements in aff-alternatives must be distinguised by either @xml:lang or @specific-use. - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + aff-alternatives check + + + Elements in aff-alternatives must be distinguished by either @xml:lang or @specific-use. + + + + + + + + + + + + + + + + + + + + + @@ -874,213 +974,378 @@ 2) alternatives content depends on parent --> - - - - - - - - - alternatives content check - - <alternatives> in < - - > may not contain < - - >. - - - - - - - - - alternatives content check - - <alternatives> in < - - > may not contain < - - >. - - - - - - - - - alternatives content check - - <alternatives> in < - - > may not contain < - - >. - - - - - - - - - alternatives content check - - <alternatives> in < - - > may not contain < - - >. - - - - - - - - - - - - alternatives content check - - <alternatives> in < - - > must contain <textual-form>. - - - - - - - - - alternatives content check - - <alternatives> in < - - > must contain one of these elements: <textual-form> or <graphic>. - - - - - - - - - alternatives content check - - <alternatives> in < - - > must contain one of these elements: <media> or <graphic>. - - - - - - - - - alternatives content check - - <alternatives> in < - - > must contain one of these elements: <media>, <table>, <textual-form>. - - - - - - - - - alternatives content check - - <alternatives> in < - - > must contain one of these elements: <tex-math>, <graphic>, <media>, or <mml:math>. - - - - - - - - - alternatives content check - - <alternatives> in < - - > must contain one of these elements: <textual-form>, <graphic>, <media> or <table>. - - - - - - - - - alternatives content check - - <alternatives> in < - - > must contain one of these elements: <textual-form>, <preformat> or <table>. - - - - - - - - - alternatives content check - - <alternatives> in < - - > must contain one of these elements: <textual-form>, <preformat>, <array> or <table>. - - - - - - - - - alternatives content check - - <alternatives> in < - - > must contain one of these elements: <textual-form>, <graphic>. - - - - - - - - + + + + + + + + + + alternatives content + check + + <alternatives> in < + + > may not contain < + + >. + + + + + + + + + alternatives content + check + + <alternatives> in < + + > may not contain < + + >. + + + + + + + + + alternatives content + check + + <alternatives> in < + + > may not contain < + + >. + + + + + + + + + alternatives content + check + + <alternatives> in < + + > may not contain < + + >. + + + + + + + + + + + + alternatives content + check + + <alternatives> in < + + > must contain <textual-form>. + + + + + + + + + alternatives content + check + + <alternatives> in < + + > must contain one of these elements: <textual-form> or <graphic>. + + + + + + + + + alternatives content + check + + <alternatives> in < + + > must contain one of these elements: <media> or <graphic>. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + alternatives content + check + + <alternatives> in < + + > must contain one of these elements: <media>, <table>, <textual-form>. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + alternatives content + check + + <alternatives> in < + + > must contain one of these elements: <tex-math>, <graphic>, <media>, or <mml:math>. + + + + + + + + + + + + + + + + + + + + + + + + + + + + alternatives content + check + + Multiple <mml:math> elements are not allowed in <alternatives> + + + + + + + + + alternatives content + check + + <alternatives> in < + + > must contain one of these elements: <textual-form>, <preformat> or <table>. + + + + + + + + + alternatives content + check + + <alternatives> in < + + > must contain one of these elements: <textual-form>, <preformat>, <array> or <table>. + + + + + + + + + alternatives content + check + + <alternatives> in < + + > must contain one of these elements: <textual-form>, <graphic>. + + + + + + + + + alternatives content + check + + <alternatives> in < + + > must contain one of these elements: <textual-form>, <graphic> or <media>. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + alternatives content + check + + <alternatives> in < + + > must have at least one local file. + + + + + + + + + - - - - - - - - - - - alternatives parent check - - <alternatives> is only allowed in elements named: - - . - - - - + '')"/> + + + + + + + + + + alternatives parent + check + + <alternatives> is only allowed in elements named: + + . + + + + - - - - + - - - - - - - - - - - - - - - - check - - - [ - - ] in [ - - ] must all include @specific-use if any include it. - - - - - - - - - check - - - - @specific-use on - - / - - should be unique. - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + check + + + [ + + ] in [ + + ] must all include @specific-use if any include it. + + + + + + + + + check + + + + @specific-use on + + / + + should be unique. + + + + + + + + + - - - - - - - - - no - - - - - - - - - - - yes - - - - - - - - - - + + + + + + + + no + + + + + + + + + + + yes + + + + + + + + + + - - - - - - - - - - - - - - - - - check - - - Exactly one [ - - ] in [ - - ] must have the @xml:lang as [article]. - - - - - - - - - check - - - - @xml:lang on - - / - - should be unique. - - - - - - - - + + + + + + + + + + + + + + + + + check + + + Exactly one [ + + ] in [ + + ] must have the @xml:lang as [article]. + + + + + + + + + check + + + + @xml:lang on + + / + + should be unique. + + + + + + + + - + - article-id check + article-id + check article-id must contain a value - + @@ -1302,29 +1588,32 @@ check that articles that are supposed to be in english are englishy --> - - - - - - - - - - - - language check - - article is listed with @xml:lang='en', but it does not seem to be English. - - - - - - - + + + + + + + + + + + + language + check + + article is listed with @xml:lang='en', but it does not seem to be English. + + + + + + + - - release-delay-pi check - - day and month values must be numbers. There is a capital 'oh' rather than a zero. - - - - - - - - release-delay-pi check - - release-delay processing instruction must be of the form <?release-delay x|y ?> where x is the month value and y is the day value. - - - - - - - - - + + release-delay-pi + check + + day and month values must be numbers. There is a capital 'oh' rather than a zero. + + + + + + + + release-delay-pi + check + + release-delay processing instruction must be of the form <?release-delay x|y ?> where x is the month value and y is the day value. + + + + + + + + + - - - - + + + + @@ -1444,75 +1745,144 @@ - - - + + + + + + + + + + + + - + + + + + + + + + + + + + + + article-type attribute value check + + + should not have an article-type value of ' + '. + + + + + + + + article-type attribute value check + + + should not have + + an article + + + a response + + -type value of ''. + + + + + + + + + - - + + - + - article-type attribute check + article-type attribute value + check - Unknown article-type value ''. - - - + Unknown article-type value ''. + + - + @@ -1529,27 +1899,32 @@ - + - + - + - + - article-type attribute check + product review + check article-type is set to 'book-review' or 'product-review' but the article does not contain a product element - + @@ -1567,161 +1942,183 @@ - + - + - + - article-type attribute check + expression-of-concern related article check Expression of Concern should have a related-article element with the related-article-type attribute set to 'object-of-concern' or a related-object element with the link-type attribute set to 'object-of-concern' - + - + - + - - + + - + - article-type attribute check + correction related object check - Corrections should have a related-article element with the related-article-type attribute set to 'corrected-article' or a related-ojbect element with the link-type attribute set to 'corrected-article' + Corrections should have a related-article element with the related-article-type attribute set to 'corrected-article' or a related-object element with the link-type attribute set to 'corrected-article' - + - + - + - + - + - article-type attribute check + retraction related object check Retractions should have a related-article element with the related-article-type attribute set to 'retracted-article' or a related-object element with the link-type attribute set to 'retracted-article' - + - + - + - + - + - + - article-type attribute check + in-brief article related article check - - - If an *in brief* article has a related-object element, the link-type attribute should be set to [article-reference], not - - - - If an *in brief* article has a related-article element, the related-article-type attribute should be set to [article-reference], not - - - - + + + If an *in brief* article has a related-object element, the link-type attribute should be set to [article-reference], not + + + + If an *in brief* article has a related-article element, the related-article-type attribute should be set to [article-reference], not + + + + - + - + - + - + - + - article-type attribute check + letter reply related article check Replies should have a related-article element with the related-article-type attribute set to 'letter', not ' - '. - + '. - + - + - + - + - - article-type attribute check + article commentary related article check Commentaries should have a related-article element with the related-article-type attribute set to 'commentary-article' or a related-object element with the link-type set to 'commentary-article', not ' - '. - + '. - + @@ -1735,24 +2132,25 @@ - + - + - + - attribute is required + attribute is required + - + @@ -1776,11 +2174,13 @@ - - + + @@ -1806,32 +2206,36 @@ - + - + true - + false - + false - + true - + false @@ -1844,52 +2248,53 @@ false - + true - + false - + false - + - back element checking + back element + check should be moved to the back matter - + - + - + true - + false - + false @@ -1897,17 +2302,18 @@ - - + + - back element checking + glossary element + check - Unless it is required here for the flow of the article, + Unless it is required here for the flow of the article, should be moved to the back matter - - - + + + @@ -1925,13 +2331,13 @@ - + title should not be set in back - + @@ -1966,45 +2372,179 @@ - + - + - + - + - + - + Entire content of should not be formatted - + + + + + + + + + + error + + <abstract> must not exceed 9900 characters in length. + + is characters long + + + + + + + + + + + + + + + + + + + + error + + < + + > must have a title + + + + + + + + + + + error + + < + + > must have an ID + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -2024,11 +2564,11 @@ returned. Context: caption --> - + - + @@ -2037,35 +2577,39 @@ - + - + - + - - - - error - warning - - + + + + error + warning + + Entire content of < - - > in <caption> has been wrapped in a formatting tag (bold, italic, etc.) + + > in <caption> has been wrapped in a formatting tag (bold, italic, etc.) - - + + @@ -2085,13 +2629,18 @@ - - + + - - + + - - - abstract content check + + + abstract content + check Only use sec if abstract must be divided into multiple sections. Otherwise, simply tag with p elements. - - - - - - - + + + + + + + - + - + - - - + + + - + - abstract type check - abstract requires an abstract-type attribute to distinguish it from the other abstracts in this article - - - - - + abstract type + check + abstract requires an + abstract-type attribute to distinguish it from the other + abstracts in this article + + + + + @@ -2151,65 +2707,67 @@ Returns and error if the element has been referenced by an . --> - + - - - - - object reference check - - < - - > may not be referenced directly - - when it is in <boxed-text> - - . Reference should be made to the ancestor - - - <boxed-text>. - - - <sec>. - - - - - - - - - + - + - - - - - - - - - - - + + + + + + + + + + + - - - No cross-reference to floating object - - - with id value - - - + + + No cross-reference to floating + object + + + with id value + + + @@ -2220,33 +2778,33 @@ --> - - - + + + - + - + required child - < - - > must have a child < - - >. - + < + + > must have a child < + + >. + - - + + - - + - - - - - - - - - - - - - - - citation-alternatives check - - - Multiple element-citations in citation-alternatives must be distinguised by either @xml:lang or @specific-use. - - - - - - - - - - - - - - - - - - - - - - - - - - citation-alternatives check - - - Multiple mixed-citations in citation-alternatives must be distinguised by either @xml:lang or @specific-use. - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + citation-alternatives check + + + Multiple element-citations in citation-alternatives must be distinguished by either @xml:lang or @specific-use. + + + + + + + + + + + + + + + + + + + + + + + + + + citation-alternatives check + + + Multiple mixed-citations in citation-alternatives must be distinguished by either @xml:lang or @specific-use. + + + + + + + + + + + + + + + + + + + + + - + - - + + - - - - + - - - - - - - - - - - - - collab-alternatives check - - - Elements in collab-alternatives must be distinguised by either @xml:lang or @specific-use. - - - - - - - - - - - - - - - - - - - - - + + + + + + + - - - - + + + + collab-alternatives check + + + Elements in collab-alternatives must be distinguished by either @xml:lang or @specific-use. + + + + + + + + + + + + + + + + + + + + + + + + + + - - - - - - collab error - - < - - > must contain the collaboration name, not just a <contrib-group>. - - - - - - - + + + + + collab check + + < + + > must contain the collaboration name, not just a <contrib-group>. + + + + + + + - - - - - - contributor error - - < - - > as child of <collab> must not contain <collab>. - - - - - + + + + + + contributor check + + < + + > as child of <collab> must not contain <collab>. + + + + + - + + select="id($context/@rid)[self::contract-sponsor]"/> - + select="id($context/@rid)[not(self::contract-sponsor)]"/> + - + - contract-element checking + contract element check contract-num must have an rid attribute - + - + - contract-element checking + contract element check contract-num should only link to contract-sponsor elements - + - + - + - - + - - - - - - - - - - - badstyle - - - - - - - - - - - - contract-element checking - - contract-sponsor must have an id attribute or an rid attribute - - - - - - - - - - contract-element checking - - contract-sponsor should only link to contract-num or contract-sponsor elements - - - - - - - + + + + + + + + + + + badstyle + + + + + + + + + + + + contract element check + + contract-sponsor must have an id attribute or an rid attribute + + + + + + + + + + contract element check + + contract-sponsor should only link to contract-num or contract-sponsor elements + + + + + + + - - - - - - - - - <contrib> should not have an equal-contrib attribute set to 'yes' and a fn where the fn-type is 'equal' - - - - - - - - - - - - - - - - - <contrib> must have a contrib-type attribute set to 'author' or 'editor' - - - - - - - - - - - - - - - - - - <contrib> should not have a deceased attribute set to 'yes' and a fn where the fn-type is 'deceased' - - - + + + + + + + + + + + + <contrib> must have a contrib-type attribute set to 'author' or 'editor' + + + + + - - - - - <contrib> should not have an equal-contrib attribute set to 'yes' and a fn where the fn-type is 'equal' - - - - - - - + - + - + - + <contrib> must have one of the following: [collab, collab-alternatives, name, name-alternatives, anonymous]. - + - + - + <contrib> cannot contain a <collab> and a <name> - + + + + + + + + + <contrib> cannot contain a <name> and <name-alternatives> + + - - + + - + <contrib> should only contain a single <name> or a single <collab> - + - - - - - - - - Alternate versions of [collab] must be tagged within [collab-alternatives]. - - - Alternate versions of [name] must be tagged within [name-alternatives]. - - - - - - - + + + + + + + + Alternate versions of [collab] must be tagged within [collab-alternatives]. + + + Alternate versions of [name] must be tagged within [name-alternatives]. + + + + + + + + + + + + + + contrib with collab must not include contrib-id. + + + + + + + + + + + + + + + + + + contrib-id must include contrib-id-type attribute. + + + + + + + + + + + + + + ORCID values must start with 'http://orcid.org/' or 'https://orcid.org/' + + + + + + + + + + + + + + + + + + + + + + ORCID values must start with 'http://orcid.org/' or 'https://orcid.org/' + + + + + + + + + + + + + + + + + + copyright-statement should not contain license information + + + + + + + + + + + + + + + + + + copyright-statement should not contain license information. Use <license> tagging for this purpose. + + + + + + - - - - - - contrib with collab must not include contrib-id. - - - - - - - - - - - - - - - - - contrib-id must include contrib-id-type attribute. - - - - - - - - - - - - - - ORCID values must start with 'http://orcid.org/' - - - - - - - @@ -2776,63 +3399,66 @@ - + - + copyright-year does not contain a valid year - + - - - - + - - - - - - - collection content check - - Articles with @article-type="collection" must have more than 1 sub-article or response. - - - - - - - - - + + + + + + collection content + check + + Articles with @article-type="collection" must have more than 1 sub-article or response. + + + + + + + + + - - - - - - - correction content check - - Correction content must be in article body, not abstract. - - - - - + + + + + + + correction content + check + + Correction content must be in article body, not abstract. + + + + + @@ -2848,22 +3474,23 @@ - + - + - + - + @@ -2871,6 +3498,42 @@ + + + + + + + + + + + + When @custom-type is present, @ must be present and have a value of "custom" + + + + + + + + + When the value of @ is "custom", @custom-type must be present and non-empty + + + + + + + - - - - - - - - - - - - - day element should contain a numeric value between 1 and 31, inclusive - - - - - + + + + + + + + + + + + + + + day element should contain a numeric value between 1 and 31, inclusive + + + + + + @@ -2917,41 +3583,44 @@ - + - + - + - - - disclaimers should be set in an article-level footnote. - - - notes with notes-type attribute set to 'disclaimer' must be children of front element - - - + + + disclaimers should be set in an article-level footnote. + + + notes with notes-type attribute set to 'disclaimer' must be children of front element + + + + + + + + dobs.html#dob-msdisc + + + dobs.html#dob-pmcdisc + + - - - - dobs.html#dob-msdisc - - - dobs.html#dob-pmcdisc - - - - + @@ -2966,18 +3635,19 @@ - + - display-objects sec check + display-objects sec + check display-objects sec should be located in back matter - + @@ -3010,45 +3680,87 @@ - - - - - display-objects sec check - - Display objects section can only contain fig, table-wrap, fig-group and table-wrap-group - - - - - - + + - - display-objects sec check + + display-objects sec + check + + Display objects section can only contain fig, table-wrap, fig-group and table-wrap-group + + + + + + + + + display-objects sec + check Display objects section can only contain elements that have position attributes set to "float" - + - + - - display-objects sec check + + display-objects sec + check Display objects section cannot be empty - + + + + + + + + + + Do not use < + + > to capture equations. Preferably, use MathML. Alternatively, use <tex-math> or <graphic>. + + + + + + + + + + + + disp-level check + + The value of @disp-level must be a positive integer + + + + + - - disp-quote content check - - <disp-quote> may not contain <preformat>. <disp-quote> wrapper is superfluous. - - - - + + disp-quote content + check + + <disp-quote> may not contain <preformat>. <disp-quote> wrapper is superfluous. + + + + @@ -3084,14 +3797,14 @@ --> - - + + - + doi format check @@ -3100,7 +3813,7 @@ ' - + @@ -3117,14 +3830,13 @@ - + - - - - - + + + + + @@ -3133,93 +3845,137 @@ false - + false - + false - + - + false - + - + false - + false + + + false + + true - + - - - - - + - - - - - - - - - - article-meta should only contain one print publication date - - - - - - - - - - - article-meta should only contain one electronic publication date - - - - - - - - - - - article-meta should only contain one collection date - - - - - - - + + + + + + + + + + article-meta should only contain one print publication date + + + + + + + + + + + article-meta should only contain one electronic publication date + + + + + + + + + + + article-meta should only contain one collection date + + + + + + + + + + + + + + + + + duplicate pub-id-type check + + metadata should contain only one <article-id> with @pub-id-type=" + + " + + + + + + - - empty element check + + empty element + check - should not be empty + should not be empty + + } - - + + @@ -3259,17 +4018,20 @@ - empty element check + empty element + check - should not be empty + should not be empty + + } - + - - + + @@ -3278,181 +4040,198 @@ there may only be one epub-date in the article --> - + - - - - - article may only have one 'epub' date. - - - - - - - - - date with a day must have a month. - - - - - - - + + + + + article may only have one 'epub' date. + + + + + + + + + date with a day must have a month. + + + + + + + - - - - - - - date with a day must have a month. - - - - - - - - date must not contain multiple month elements - - - - - - - - + - - - - - - - - - - - - - - - pub-date/@date-type check - - - @date-type on [pub-date] must be an accepted value: corrected, preprint, pub, retracted. Value provided: - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - date is not valid. - - is not a leap year. - - - - - - - - - date is not valid. - - - - - - - - - - date is not valid. - - - - - + + + + + + + + + + + + + + + pub-date/@date-type check + + + @date-type on [pub-date] must be an accepted value: corrected, preprint, pub, retracted, update. Value provided: + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + date is not valid. + + is not a leap year. + + + + + + + + + + date is not valid. + + + + + + + + + + + date is not valid. + + + + + + + + + + + + + + + + yes + + + no + + + + + yes + + + + + no + + + - - - - - - - - - yes - - - no - - - - - yes - - - - - no - - - - - + @@ -3472,173 +4251,262 @@ - - - - - - + + + + + + + + + - - - - - - - - - + '')"/> + + + + + + + + + + + + + + + + + + - ext-link check + ext-link check + + ext-link must have an ext-link-type attribute + + + + + + + ext-link check + + ext-link type email must be element email + + + + + + + + + ext-link check + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + floats check - ext-link must have an ext-link-type attribute + < + + > may only contain elements that have a position attribute set to "float". - - - - - - ext-link check - - ext-link type email must be element email - - - - - - - [[$is-unchecked-elt-type:]] + + + - ext-link check - + + floats check + + < + + > section may not be empty. + - - - + - - - - - - - - - - - - - floats check - - < - - > may only contain elements that have a position attribute set to "float". - - - - - - - - - floats check - - < - - > section may not be empty. - - - - - - - - + @@ -3655,11 +4523,11 @@ Do not use the symbol attribute. Place symbol information inside a label element. - + - + - + - + - + - + - + All article-level fn's should be located inside an fn-group in back @@ -3714,23 +4586,26 @@ - + - + - + - + All article-level fn's should be located inside an fn-group in back @@ -3739,8 +4614,8 @@ - - + + - + - - yes - - - yes - - - yes - - - yes - - - - - - - - - - - - There should only be one formula represented in the < - - id=" - - "> element. If these are alternate forms of the same formula, they must all be wrapped in <alternatives>. + + yes + + + yes + + + yes + + + yes + + + + + + + + + + + + There should only be one formula represented in the < + + id=" + + "> element. If these are alternate forms of the same formula, they must all be wrapped in <alternatives>. If more than on formula is represented here, each should be in its own < - - >. - - - - - - - - - - There should only be one formula represented in the < - - id=" - - "> element. If these are alternate forms of the same formula, they must all be wrapped in <alternatives>. + + >. + + + + + + + + + + + There should only be one formula represented in the < + + id=" + + "> element. If these are alternate forms of the same formula, they must all be wrapped in <alternatives>. If more than on formula is represented here, each should be in its own < - - >. - - - - - - - - - - - - - - There should only be one formula represented in the < - - id=" - - "> element. Alternate forms of the same formula must be identified with @alternate-form-of. + + >. + + + + + + + + + + + + + + + There should only be one formula represented in the < + + id=" + + "> element. Alternate forms of the same formula must be identified with @alternate-form-of. If more than on formula is represented here, each should be in its own < - - >. - - - - - - - - - - There should only be one formula represented in the < - - id=" - - "> element. Alternate forms of the same formula must be identified with @alternate-form-of. + + >. + + + + + + + + + + + There should only be one formula represented in the < + + id=" + + "> element. Alternate forms of the same formula must be identified with @alternate-form-of. If more than on formula is represented here, each should be in its own < - - >. - - - - - - - - - - - - - - - - <disp-formula> must not have descendant <disp-formula> - - - - - - - - - - <inline-formula> must not have descendant <inline-formula> - - - - - - - + + >. + + + + + + + + + + + + + + + + + <disp-formula> must not have descendant <disp-formula> + + + + + + + + + <disp-formula> must not have descendant<inline-formula> + + + + + + + + + + + <inline-formula> must not have descendant <inline-formula> + + + + + + + + + <inline-formula> must not have descendant <disp-formula> + + + + + + + + - + - - + + <front> requires <journal-meta> . - - - - + + + + @@ -3936,14 +4853,15 @@ matches the graphic id. --> - + - - + + @@ -3961,13 +4879,13 @@ --> - - - - Do not use the <supplement> to identify a supplementary issue in <article-meta> or <front-stub>. - - - + + + + Do not use the <supplement> to identify a supplementary issue in <article-meta> or <front-stub>. + + + - - - - - - - - - - - date check - - - - - - - - - - - - - - - - date check - - - - + + + + + + + + + + + rrn date check + + + + - - - - - - - - - - - date check - - - - - + + + + + + + + + + + book date check + + + + + + + + + + + + + + + + date check + + + + + + + + + + + + + + + + + article date check + + + + + + + - - - - - - - - - - - date check - - - - - - - - - - + + xlink:href attribute cannot be empty - - - - - - - - xlink:href should not contain leading or trailing spaces. - - - - + + + + + + + + + xlink:href should not contain leading or trailing spaces. + + + + + + + + xlink:href must not start with the # character. + + + + - + @@ -4172,8 +5134,8 @@ requires an id attribute. - - + + @@ -4185,23 +5147,24 @@ for the given parent. Context: various --> - + - + - + id attribute value in p must begin with 'P'. - - + + @@ -4209,11 +5172,12 @@ - + - id attribute value in fig must begin with 'F'. - - + id attribute value in fig must begin with 'F'. + + @@ -4221,35 +5185,39 @@ - + id attribute value in table-wrap must begin with 'T'. - + - + - + id attribute value in disp-formula must begin with 'FD'. - + - + - + id attribute value in mml:math must begin with 'M'. - + @@ -4257,11 +5225,12 @@ - + id attribute value in list must begin with 'L'. - + @@ -4269,11 +5238,12 @@ - + id attribute value in disp-quote must begin with 'Q'. - + @@ -4281,35 +5251,38 @@ - + id attribute value in supplementary-material must begin with 'SD'. - + - + - + id attribute value in sec must begin with 'S'. - + - + - - + + id attribute value in ack must begin with 'S'. - + @@ -4317,11 +5290,12 @@ - + id attribute value in aff must begin with 'A'. - + @@ -4329,11 +5303,12 @@ - + id attribute value in app must begin with 'APP'. - + @@ -4341,11 +5316,12 @@ - + id attribute value in boxed-text must begin with 'BX'. - + @@ -4353,11 +5329,12 @@ - - + + id attribute value in fn must begin with 'TFN'. - - + + @@ -4365,28 +5342,30 @@ - + id attribute value in fn must begin with 'FN'. - - + + - + id attribute value in ref must begin with 'R'. - + - - + + @@ -4404,14 +5383,16 @@ false - - + + false - + true @@ -4436,78 +5417,83 @@ - + - false + false - + - + false - + - + - - - - + + + + - + true - + - + true - + false - + false - + - + false - + true - + @@ -4522,95 +5508,123 @@ - + - - - + + + - + false - + false - + - + true - + - + true - + - + + select="'JAN-FEB-MAR-APR-MAY-JUN-JUL-AUG-SEP-OCT-NOV-DEC-'" + /> - + - + - + - + - + - + - - + + + + + + + + true + false + + + true - + true - + true @@ -4626,6 +5640,11 @@ true + + + + true + false @@ -4648,24 +5667,26 @@ - + false - + false - + - + false - + true @@ -4684,13 +5705,13 @@ - + - - - false - - + + + false + + true @@ -4700,17 +5721,17 @@ true - + true - + true - + true @@ -4742,8 +5763,10 @@ - + true @@ -4753,25 +5776,84 @@ - - - - - - - - - - - @pub-type may only be set to ppub or epub on element issn. - - - - - - + + + + + + + + + + @pub-type may only be set to ppub or epub on element issn. + + + + + + + + + + + + + + + @publication-format may only be set to print or electronic on element issn. + + + + + + + + + + + + issue-count-check + + More than one <issue> is not allowed in < + + > + + + + + + + + + + + + + issue-id-check + + <issue-id> not allowed if no <issue> is tagged + + + + + + - + + - journal-meta-check + journal-meta-check journal-id element cannot be empty - + - journal-meta-check + journal-meta-check journal-id element must have a journal-id-type attribute - - - - - - - - - - - - - journal-meta-check + + + + + + + + + + + + + journal-meta-check journal-id-type attribute value is restricted to: 'archive', 'aggregator', 'coden', 'doi', 'hwp', 'index', 'iso-abbrev', 'issn', 'nlm-ta', 'pmc', 'publisher-id', 'sc' - + - + - - + + + - - - - - - - - - - - journal-meta-check - - journal-title is required - - - - - - - + + + + + + + + + + + journal-meta-check + + journal-title is required + + + + + + + - - - - - - - - - - - - journal-meta-check - - issn is required - - - - - - - + + + + + + + + + + + + journal-meta-check + + issn is required + + + + + + + - - + + + - + @@ -4919,297 +6025,441 @@ - + - journal-meta-check + journal-meta-check issn does not have the correct form. Must be: \d{4}-\d{3}(\d|X) - + + + + + + + + journal-meta-check + + issn must have a pub-type or publication-format attribute + + - - + + - journal-meta-check + journal-meta-check + + issn must have either a pub-type or publication-format attribute, not both. + + + + + + + + journal-meta-check - issn must have a pub-type attribute + An issn with pub-type=ppub must not coexist with an issn with publication-format=print. Please remove one. - + + + + + journal-meta-check + + An issn with pub-type=epub must not coexist with an issn with publication-format=electronic. Please remove one. + + + + - - - - - + - - - - + + + + + + kwd-group-check + + kwd-group has only 1 kwd with punctuation; check that keywords are tagged correctly. + + + + + + + + + + + + + + + + + + + + + + + + + + + - kwd-group-check + license cc url check - kwd-group has only 1 kwd with punctuation; check that keywords are tagged correctly. + The Creative Commons license URL does not point to a standard machine-readable Creative Commons license, + please check for errors in the URL and/or extra terms (such as legalcode or deed.en) + after the license version number. URL: + - + + + + + + + license cc url check + + tags.html#el-license + warning - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + creativecommons.org/publicdomain/zero/1.0 + + + + + + + + + + - - - + + + - + - + - + - - - - - - - - - - - - - - - - - license/ext-link check - - URIs in ext-link content and @xlink:href do not match - - - - - - - - - + + + + + + + + + + + + + + license/ext-link check + + URIs in ext-link element content and @xlink:href must be identical but are not. Content URI: [ + + ] @xlink:href URI: [ + + ] + + + + + + + + + + + + + + + + + + + + + + + license + + + + + + + + ali:license_ref + + + + + + + + + + + + + + + + + + cc no uri license check + + License statement indicates a Creative Commons license, but contains no license URI. + + + + + + + + + cc license_ref check + + A license may not have more than one ali:license_ref elements with a Creative Commons URL. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Creative Commons license + check + License element must not + contain different Creative Common license URIs. + != + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - license/ext-link check + license check - URIs in ext-link content and @xlink:href do not match + + + URI values in @xlink:href on <license> and in an <ext-link> descendant of that <license> must be identical but are not. license/@xlink:href URI: [ + + + URI values in <ali:license_ref> and in an <ext-link> descendant of that <license> must be identical but are not. ali:license_ref URI: [ + + + + ] ext-link descendant URI: [ + + ]. + - + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - | - - - - license check - - Do not include different @xlink:href values on <license> and an <ext-link> descendant of <license>. - - - - - - - - - - - - - - - - - license check - - Do not include different @xlink:href values on <license> and an <ext-link> descendant of <license>. - - - - - - - - - license check - - Do not include different @xlink:href values on <license> and an <ext-link> descendant of <license>. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Creative Commons license check - License element must not contain different Creative Common license URIs. - != - - - - - - - - - - - - - - - - - + + + label should not be used inside list-item - - - - - - + - + - - + + - + - + - q and answer list check + q and answer list + check list with list-content set to 'QandA' should contain paragraphs with the content-type attribute set to 'question' or 'answer' - + - - + + - - - - - - - - - + '')"/> + + + + + + + - + - - - + + - - + '], not [', $context/@list-type, '].')"/> + + - - + + + + + + + + + + + + + + + + + The continued-from attribute must not reference its parent list. + + + + + + + + + The continued-from attribute must reference a list, not a + + . + + + + + + + + + + The continued-from attribute may not reference a list that continues the current list. + + + + + - - - - - - Lists may not have titles in book content. - - - - - + + + + + Lists may not have titles in book content. + + + + + + - - + + + - + - lpage should follow fpage missing + fpage found with no corresponding lpage. lpage is required @@ -5354,40 +6662,40 @@ - + - + Figure - - + + Figures - - + + Table - - + + Tables - - + + Figures and Tables - + Figure and Tables - + Figures and Table - + Figure and Table - + INVALID CONTENT @@ -5396,7 +6704,7 @@ - - - + + + - - - - - - - Use of deprecated mml:math attribute fontsize, fontweight, fontstyle, fontfamily, or color - - - - - - - - - - - - Use of deprecated mml:math attribute fontsize, fontweight, fontstyle, fontfamily, or color - - - - - - - + + + + + + + Use of deprecated mml:math attribute fontsize, fontweight, fontstyle, fontfamily, or color + + + + + + + + + + + + Use of deprecated mml:math attribute fontsize, fontweight, fontstyle, fontfamily, or color + + + + + + + - - + + + - + Found mml:mlabeledtr or mml:malignmark - + @@ -5473,8 +6798,9 @@ --> - - + + + @@ -5484,8 +6810,8 @@ - - + + - - - - - - - - - - none - - - - - - - - - - none - - - - - - - - - - none - - - - - - - - - - - - - - - - - should not follow itself. This is meaningless tagging. - - - - - - - - - - - - - - - - should not follow itself. This is meaningless tagging. - - - - - - - - - - - - - - - should not follow itself. This is meaningless tagging. - - - - - - - - - - - - should not follow itself. This is meaningless tagging. - - - - - - + + + + + + + + + + none + + + + + + + + + + none + + + + + + + + + + none + + + + + + + + + + + + + + + + + + + should not follow itself. Numbers must be in a structure or be separated by operators. Complete numbers should be tagged together. Do no separate digits into individual mml:mn tags. + + + + + + + + + + + + + + + + should not follow itself. Numbers must be in a structure or be separated by operators. Complete numbers should be tagged together. Do no separate digits into individual mml:mn tags. + + + + + + + + + + + + + + + + + + + + should not follow itself. It should include the complete word or phrase. Space (U+0020) characters are preserved in mml:mtext. + + + + + + + + + + + + + + + + should not follow itself. It should include the complete word or phrase. Space (U+0020) characters are preserved in mml:mtext. + + + + + + @@ -5621,17 +6984,18 @@ --> - + - + mathml elements prescripts and none are not allowed as children of the math element - - - - + @@ -5672,43 +7036,45 @@ --> - - - error - warning - - - - - + + + error + warning + + + + + - + <mml:mrow> should not be used to wrap a single child element. - - - - + + + + - + - - + + - + <mml:mrow> should not be used to wrap only child <mml:mrow> elements. - - - - + + + + - + - + - - + + - + mathml element @@ -5733,7 +7100,32 @@ - + + + + + + + + + + + + + mathml element + + must be a descendant of the + + element + + + + @@ -5744,16 +7136,18 @@ - + - + mml:msub mml:msup mml:msubsup elements must wrap the entire expression they affect. - - + + - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + - - - - - + + + + + month as a number should have a value between 1 and 12, inclusive. - + - - - + + + @@ -5936,197 +7351,153 @@ - + - month element should contain a numeric value between 1 and 12, inclusive + month element should contain a numeric value between 1 and 12, inclusive + - + - - - - + - - - - + + + + - - - - Manuscript has extra whitespace characters in mixed content elements. - - - - - - - - - - - - - - - - - - - - - - - - name-alternatives check - - - Elements in name-alternatives must be distinguised by either @xml:lang or @specific-use. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - name check - - - When name only contains given-names, it must specify @name-style="given-only". - - - - + + + + Manuscript has extra whitespace characters in mixed content elements. + + + + + + - + - - - - - - - - - - - - - + + + + + + - - - - - - - - + + + + + + name-alternatives check + + + Elements in name-alternatives must be distinguished by either @xml:lang or @specific-use. + + + + - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + name check + + + When name only contains given-names, it must specify @name-style="given-only". + + + + + + + + name check + + + When @name-style="given-only", surname must not be present. + + + + + + + + + name check + + + Name parts must not be punctuation only. [ + + + + ] + + + + - - - - + - + - - + + @@ -6177,7 +7548,7 @@ - + - - + + + note-in-proof should be a direct child of back - + - + + + + + + + + + + + + + PMID must not begin with a zero + + + + + + + + PMID must contain only numbers + + + + + - - + A <license> must be present in the article-level <permissions> when an OA funder has been identified in <open-access>. - + - - - + + + @@ -6237,49 +7638,59 @@ - - + + - - + + - - - - - - - - No line inside <preformat> may be greater than 76 characters.[ - - chars]. " - - " - - - - - - - - - - + - - - - - - - - - - + + + + + + No line inside <preformat> may be greater than 76 characters.[ + + chars]. " + + " + + + + + + + + + + + + + + + + + + + + + @@ -6292,19 +7703,23 @@ --> - - + + + - + - + - article-type attribute-check + article-type + attribute-check article-meta contains a product element: article-type attribute should be set to 'book-review' or 'product-review' @@ -6312,7 +7727,7 @@ - + - - - - - - - - - - - - - pub-date check - - articles with a collection date must also have an e-pub date. - - - - - - pub-date check - - articles with a collection date must have an e-pub date with day and month. - - - - - - - - - - pub-date check - - article-meta must contain a real publication date. - - - - - - - - - + + + + + + + pub-date + check + + articles with a collection date must also have an e-pub date. + + + + + + pub-date + check + + articles with a collection date must have an e-pub date with day and month. + + + + + + + + + + pub-date check + + article-meta must contain a real publication date. + + + + + + + + + - - - - - - - - - pub-date check - - Articles must not contain both print and collection dates. - - - - - - - - pub-date check - - Articles must not contain both print and collection dates. - - - - - - - - - - pub-date check - - Articles must not contain both print and collection dates. - - - - - - - - pub-date check - - Articles must not contain both print and collection dates. - - - - - - - - - - - + + + + + + + + pub-date + check + + Articles must not contain both print and collection dates. + + + + + + + + pub-date + check + + Articles must not contain both print and collection dates. + + + + + + + + + + pub-date + check + + Articles must not contain both print and collection dates. + + + + + + + + pub-date + check + + Articles must not contain both print and collection dates. + + + + + + + + + + + - - - - - - - - - - - - - - - - - - - pub-date check - - [pub-date] must have either [@pub-type] or [@date-type + @publication-format]. Do not use [@pub-type] with [@publication-format]. - - - - - + + + + + + + + + + + + + + + + + + + pub-date check + + [pub-date] must have either [@pub-type] or [@date-type + @publication-format]. Do not use [@pub-type] with [@publication-format]. + + + + + + + + + pub-date check + + [@date-type] must be accompanied by [@publication-format]. + + + + + + pub-date check + + [@publication-format] must be accompanied by [@date-type]. + + + + + + + + + + - - - - - - + + - - - - - - - + + + + + + + + + - + - + - + - + - - - - + + + + + - + - - - + + + - + - - + + + select="'pub-type attribute check'"/> - - - - - - - - - - + + + + + + + + + + - - + + - - + + - - + select="'pub-type attribute check'"/> + + - - + + - + select="'pub-type attribute check'"/> + - - - - - - - - - - - - - - - pub-date/@date-type check - - - @publication-format on [pub-date] must be an accepted value: print, electronic, electronic-print. Value provided: - - - - - - - - + + + + + + + + + + + + + + + pub-date/@publication-format check + + + @publication-format on [pub-date] must be an accepted value: print, electronic, electronic-print. Value provided: + + + + + + + + @@ -6704,9 +8206,11 @@ - + @@ -6715,8 +8219,8 @@ - - + + - - - - - - - - - . - - - + + + + + The attributes included in related-article are insufficient to identify this element's target article. Please review PMC's tagging guidelines to help you construct a fully-identified related-article element. + + + - - - - - - xlink:href may only be a PMCID if ext-link-type="pmc". - - is not a PMCID. - - - - - + + + + + + xlink:href may only be a PMCID if ext-link-type="pmc". + + is not a PMCID. + + + + + - + - - - + + + related-article element is missing related-article-type attribute - + - - + + related-article element is missing an id attribute - + - - + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - related-article element must have @ext-link-type to classify the value in @xlink:href. - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + related-article element must have @ext-link-type to classify the value in @xlink:href. + + + + - + - - - related-article type check - - <related-article> must contain an @related-article-type with the value "commentary-article", "corrected-article", "addended-article", "expression-of-concern", or "retracted-article", not - - . - - - - - - - related-article @ext-link-type check - - <related-article> must contain an @ext-link-type with the value "pmcid" and the @xlink:href must include a PMC ID or PubMed ID. - - - - - - - related-article @xlink:href check - - <related-article> must contain an @xlink:href that contains a PMC ID or PubMed ID. - - - - + + + related-article type + check + + <related-article> must contain an @related-article-type with the value "commentary-article", "corrected-article", "addended-article", "expression-of-concern", or "retracted-article", not + + . + + + + + + + related-article @ext-link-type + check + + <related-article> must contain an @ext-link-type with the value "pmcid" and the @xlink:href must include a PMC ID or PubMed ID. + + + + + + + related-article @xlink:href + check + + <related-article> must contain an @xlink:href that contains a PMC ID or PubMed ID. + + + + + + + + + + + + + + + + + + + <related-object> requires an @id. + + + + + + + + + + Every target id attribute (@source-id, @document-id, @object-id) requires a target id-type attribute (@source-id-type, @document-id-type, @object-id-type) to identify it. + + + + + + + + + + <related-object> must must describe a link to something: a work, a document in a work, or an object in a document in a work. + + + + + + + + + + + + + + <related-object> with + document-type="article" must have document-id-type of [doi + | pmcid | pmid]. Supplied value is []. + + + + + + + + + <related-object> with + document-type="article" must have a document-id. + + + + + + + + + + + + + + + + + + + + + + + + + - - - - - - - - - - - - <related-object> requires an @id. - - - - - - - - - - Every target id attribute (@source-id, @document-id, @object-id) requires a target id-type attribute (@source-id-type, @document-id-type, @object-id-type) to identify it. - - - - - - - - - - <related-object> must must describe a link to something: a work, a document in a work, or an object in a document in a work. - - - - - - - - - - - - - - <related-object> with document-type="article" must have document-id-type of [doi | pmcid | pmid]. Supplied value is []. - - - - - - - - - <related-object> with document-type="article" must have a document-id. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - <related-article> xlink:href is a DOI but the ext-link-type is - - . - - - - - - - - - + + + + + + + + + + + + + + + <related-article> xlink:href is a DOI but the ext-link-type is + + . + + + + + + + + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - warning - - - error - - - - - <related-article> DOI is the same as the article DOI. - - - - - - - - - - - - - - - warning - - - error - - - - - <related-article> volume and page point to the containing article. - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + <related-article> DOI is the same as the article DOI. + + + + + + + + + <related-article> DOI is the same as the article DOI. + + + + + + + + + + + + + + + + <related-article> volume and page point to the containing article. + + + + + + + + + <related-article> volume and page point to the containing article. + + + + + + + + + + + - - - - - - - - link-type - - - related-article-type - - - - - - - - - - - - - - - - - - - + + + + + + + + link-type + + + related-article-type + + + + + + + + + + + + + + + + + + + - + + + + + + + + + + + + + + ' + + + + + + + + + - + - + + + + + + + + + + + + + + + + - - + + - + - + - - + + - + - + - - + + - - + + - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - + + - + + + + + + + + + + + + + + + + + + + - + @@ -7357,19 +9079,20 @@ - + - season should only contain a named season (Spring, Summer, Fall, Autumn, Winter), - a month range (Jan-Feb or January-February), or a named season range (Spring-Summer). Current content is: + season should only contain a named season (Spring, Summer, Fall, Autumn, Winter), + a month range (Jan-Feb or January-February), or a named season range (Spring-Summer). Current content is: - + - + @@ -7389,18 +9112,19 @@ - + - - - + + + - + - - + - sec-type checking + sec-type check sec should have sec-type attribute set to 'materials|methods' - + - + - + - - + - + - sec-type checking + sec-type check sec should have sec-type attribute set to 'methods' - + - + - - + - sec-type checking + sec-type check sec should have sec-type attribute set to 'materials' - + - + - - - + + + - + - + - sec-type checking + sec-type check sec should have sec-type attribute set to 'extended-data'. - + - + - + - + - + - sec-type checking + sec-type check sec should have sec-type attribute set to 'signature' - + - + - + - - - - - - - section title checking - - sec with @sec-type='extended-data' must have a <title> of "Extended Data". - - - - - - - - extended data section check - - Extended Data section must contain at least a figure or table. - - - + + + + + + + + section title check + + sec with @sec-type='extended-data' must have a <title> of "Extended Data". + + + + + + + + extended data section + check + + Extended Data section must contain at least a figure or table. + + + - - - - extended data object check - - Extended Data objects must have position attributes set to "anchor" - - - - + + + + extended data object + check + + Extended Data objects must have position attributes set to "anchor" + + + - - - - + + + + + - - + + - string-conference check + string-conference + check <string-conf> may not contain a child <string-conf>. - - + - - + + - - + + + @@ -7633,36 +9372,41 @@ - + - + - + - + - - - - + + + + - - - - - + + + + + @@ -7670,38 +9414,41 @@ - + - + - + - + - - string-date checking + +string-date check It appears that string-date could have been tagged as <date><month/><year/></date> - - + + - - string-date checking + +string-date check It appears that string-date could have been tagged as <date><season/><year/></date> @@ -7709,38 +9456,44 @@ - + - - + + - - + + - - + + - + - + @@ -7778,46 +9531,52 @@ - + - + - string-date checking +string-date check It appears that string-date could have been tagged as <date><day/><month/><year/></date> - - + + - string-date checking +string-date check It appears that string-date could have been tagged as <date><month/><day/><year/></date> - - + + + select="concat($token1, '-', $token2)"/> - - + + - string-date checking + string-date check It appears that string-date could have been tagged as <date><season/><year/></date> @@ -7826,52 +9585,52 @@ - + - + - - + - - - - - string-name checking - - String-name must not contain more than 1 <surname> or more than 1 <given-names> - - - - + + + + + string-name check + + String-name must not contain more than 1 <surname> or more than 1 <given-names> + + + + - - + - - - - - - - - - - - - DOI checking - - DOIs for >sub-article< and >response< should not be the same as the parent >article< - - - - - - - - + + + + + + + + + + + + DOI check + + DOIs for >sub-article< and >response< should not be the same as the parent >article< + + + + + + + + @@ -7884,57 +9643,85 @@ - + - + - subj-group checking + subj-group + check subj-group with subj-group-type attribute set to "heading" can only contain a single subject element - + - - - - - subj-group checking - - subj-group with subj-group-type="heading" must not contain compound-subject - - - - - + + + + + subj-group + check + + subj-group with subj-group-type="heading" must not contain compound-subject + + + + + - + - subj-group checking + subj-group + check More than one subj-group has a subj-group-type attribute set to 'heading' - - + + + + + + + + subj-group + check + + subj-group with subj-group-type="heading" must not contain inline-graphics + + + - - - - - subj-group checking - - subj-group with subj-group-type="heading" must not contain inline-graphics - - - - - + + + + + + + + + + warning + table check + + A <table> may include only one <tbody> + + + + - + - + + select="'table footnote checking'"/> table footnotes must be direct children of table-wrap-foot - - + + + + + + + + + + + + + A + + attribute must contain a positive integer, not " + + " + + + + + + + - - - + + + + + + - - + select="'Jan-Feb-Mar-Apr-May-Jun-Jul-Aug-Sep-Oct-Nov-Dec-'"/> + + + - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + - + + + + + - + + + + + - + + + + + + + - + false - + - + false - + - + - - + + + select="$comparison-string"/> - + false - + - + true - + + select="substring-after($comparison-string, '-')"/> - + + select="substring-after($comparison-string, '-')"/> - + - + + @@ -8120,27 +9960,28 @@ --> - - + + - + <tex-math> must contain a complete Lateχ document. - - - - - - + + + + + + All characters in <tex-math> must be described with Lateχ character codes. There may not be any character entities except for those defined by XML [&amp; (&), &lt;(<), &gt; (>), &quot; ("), &apos; (')]. - - - - + + + + - - + + + @@ -8161,7 +10003,7 @@ - + - + - article-title/subtitle check + article-title/subtitle + check fn should be placed in back matter - + @@ -8194,23 +10037,25 @@ - - + + - article-title/subtitle check + article-title/subtitle + check Contains an xref pointing to a fn that is not inside back/fn-group - + - + @@ -8219,29 +10064,30 @@ --> - - - - - - - - - - trans-abstract language attribute check - - The <trans-abstract> should have a different @xml:lang value than the article. Both are ' - - '. - - - - - - - - - + + + + - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + - - - - - - - - - - - - - - - - - - - - - - trans-title language attribute check - - The <trans-title> should have a different @xml:lang value than the article. trans-title/@xml:lang=' - '. - article/@xml:lang=' - '. - - + + + + + + trans-title language attribute + check + + The <trans-title> should have a different @xml:lang value than the article. trans-title/@xml:lang=' + + '. + article/@xml:lang=' + + '. + + - - - - - + + + + - - + + - - - - - trans-title-group language attribute check - - If - - has an @xml:lang, its value must match the @xml:lang on the parent <trans-title-group>. - - - - - - - trans-subtitle check - - <trans-subtitle> must correspond to a <subtitle> in the ancestor < - - >. - - - - - - + + + + + trans-title-group language + attribute check + + If + + has an @xml:lang, its value must match the @xml:lang on the parent <trans-title-group>. + + + + + + + trans-subtitle + check + + <trans-subtitle> must correspond to a <subtitle> in the ancestor < + + >. + + + + + + + + + + + + + + + volume-count-check + + More than one <volume> is not allowed in < + + > + + + + + - - - - + + + + + - + - web links checking + web links + check ext-link-type attribute should be set to 'uri' for web links - + - + - + - + - + - web links checking + web links + check xlink:href should begin with 'http://' - + - - - + + + @@ -8448,7 +10354,7 @@ - + xref (rid=" ") with attribute ref-type=" @@ -8458,7 +10364,7 @@ . Referenced element is actually of type . - + @@ -8474,18 +10380,45 @@ - - - - - - xlink attributes should not be used in this element - - - - + + + + + xlink attributes should not be used in this element + + + + + + + + + + + + + + + warning + + The namespace URI for XLink must be "http://www.w3.org/1999/xlink", not " + + " + + + + + @@ -8498,401 +10431,558 @@ - - - - - - - + + + + + + + + + xref attribute check + warning + + xref element must have @ref-type and @rid. + + + + + + + xref attribute check + warning + + xref element must have @ref-type. + + + + + - xref checking + xref check xref element has ref-type attribute but no rid attribute. + - + - + - xref checking + xref check warning target of <xref> is not in this document. - + - - - - - - xref checking + + + + + + xref + check - + - + - + - - - - xref checking - - - - - - - - - - - - - - - xref checking + + + + xref + check - + + - - - - - xref checking + + + + + xref + check + select="'an author-notes element or a fn or corresp inside author-notes'" + /> - - - - - xref checking + + + + + xref + check + select="'a citation or ref element'"/> - - - - - xref checking + + + + + xref + check + + + + + + + + + + + + + + xref + check - + - - - - - xref checking + + + + + xref + check + select=" + concat( + 'elements of type: chem-struct, chem-struct-wrapper,', + ' disp-formula, disp-formual-group, fig, or supplementary-material')" + /> - - - - - xref checking + + + + + xref + check - + - - - - - xref checking + + + + + xref + check - + - - - - - xref checking + + + + + xref + check - + - - - - - xref checking + + + + + xref + check + + + + + + + + + + + + + + xref + check - + - - - - - xref checking + + + + + xref + check - + - - - - - - xref checking + + + + xref + check - + - - - - - xref checking + + + + + xref + check - + - - - - - xref checking + + + + + xref + check + select="'a statement element'"/> - - - - - xref checking + + + + + xref + check - + - - - - - xref checking + + + + + xref + check - + - - - - - xref checking + + + + + xref + check + select="'a fn element inside a table-wrap or a td'"/> - + - - + + + + + + + + + + + + + the xref with the @rid value ' + + ' does not point to an aff element within the same book-part-meta, book-meta, or collection-meta. + + + + + + - + - + - + - - - - - - - - - + + + + + + + + + - + - - + + From 1af883c56b1e996f2b8cdaa143ef9b38002b8d8e Mon Sep 17 00:00:00 2001 From: Chris Cooper-Jones Date: Sun, 28 Jan 2024 18:56:38 +0000 Subject: [PATCH 2/2] update jats --- schema/Makefile | 31 +- schema/catalog.xml | 2 + .../publishing/1.2/BITS-embedded-index2.ent | 323 + .../publishing/1.2/JATS-XHTMLtablesetup1.ent | 587 + .../publishing/1.2/JATS-ali-namespace1.ent | 240 + .../jats/publishing/1.2/JATS-articlemeta1.ent | 2251 ++++ .../jats/publishing/1.2/JATS-backmatter1.ent | 479 + schema/jats/publishing/1.2/JATS-chars1.ent | 611 + .../jats/publishing/1.2/JATS-common-atts1.ent | 307 + schema/jats/publishing/1.2/JATS-common1.ent | 4457 +++++++ .../publishing/1.2/JATS-default-classes1.ent | 1426 +++ .../publishing/1.2/JATS-default-mixes1.ent | 541 + schema/jats/publishing/1.2/JATS-display1.ent | 1147 ++ schema/jats/publishing/1.2/JATS-format1.ent | 944 ++ schema/jats/publishing/1.2/JATS-funding1.ent | 963 ++ .../jats/publishing/1.2/JATS-journalmeta1.ent | 540 + .../1.2/JATS-journalpubcustom-classes1.ent | 417 + .../1.2/JATS-journalpubcustom-mixes1.ent | 343 + .../1.2/JATS-journalpubcustom-models1.ent | 1139 ++ .../1.2/JATS-journalpubcustom-modules1.ent | 347 + .../1.2/JATS-journalpublishing1-mathml3.dtd | 1006 ++ schema/jats/publishing/1.2/JATS-link1.ent | 511 + schema/jats/publishing/1.2/JATS-list1.ent | 602 + schema/jats/publishing/1.2/JATS-math1.ent | 492 + .../1.2/JATS-mathml3-mathmlsetup1.ent | 436 + .../publishing/1.2/JATS-mathml3-modules1.ent | 276 + schema/jats/publishing/1.2/JATS-modules1.ent | 696 ++ .../jats/publishing/1.2/JATS-nlmcitation1.ent | 371 + schema/jats/publishing/1.2/JATS-notat1.ent | 354 + schema/jats/publishing/1.2/JATS-para1.ent | 582 + schema/jats/publishing/1.2/JATS-phrase1.ent | 607 + .../jats/publishing/1.2/JATS-references1.ent | 1328 ++ .../publishing/1.2/JATS-related-object1.ent | 369 + schema/jats/publishing/1.2/JATS-section1.ent | 410 + .../publishing/1.2/JATS-xmlspecchars1.ent | 475 + .../1.2/catalog-jats-v1-2-no-base.xml | 1015 ++ .../1.2/catalog-jats-v1-2-with-base.xml | 1018 ++ schema/jats/publishing/1.2/iso8879/isobox.ent | 61 + .../jats/publishing/1.2/iso8879/isocyr1.ent | 88 + .../jats/publishing/1.2/iso8879/isocyr2.ent | 47 + schema/jats/publishing/1.2/iso8879/isodia.ent | 35 + .../jats/publishing/1.2/iso8879/isolat1.ent | 83 + .../jats/publishing/1.2/iso8879/isolat2.ent | 142 + schema/jats/publishing/1.2/iso8879/isonum.ent | 97 + schema/jats/publishing/1.2/iso8879/isopub.ent | 105 + .../publishing/1.2/iso9573-13/isoamsa.ent | 167 + .../publishing/1.2/iso9573-13/isoamsb.ent | 143 + .../publishing/1.2/iso9573-13/isoamsc.ent | 43 + .../publishing/1.2/iso9573-13/isoamsn.ent | 114 + .../publishing/1.2/iso9573-13/isoamso.ent | 73 + .../publishing/1.2/iso9573-13/isoamsr.ent | 204 + .../publishing/1.2/iso9573-13/isogrk3.ent | 64 + .../publishing/1.2/iso9573-13/isomfrk.ent | 75 + .../publishing/1.2/iso9573-13/isomopf.ent | 49 + .../publishing/1.2/iso9573-13/isomscr.ent | 75 + .../publishing/1.2/iso9573-13/isotech.ent | 182 + .../jats/publishing/1.2/mathml/mmlalias.ent | 564 + .../jats/publishing/1.2/mathml/mmlextra.ent | 122 + schema/jats/publishing/1.2/mathml3-qname1.mod | 294 + schema/jats/publishing/1.2/mathml3.dtd | 1682 +++ .../jats/publishing/1.2/xhtml-inlstyle-1.mod | 34 + schema/jats/publishing/1.2/xhtml-table-1.mod | 333 + .../jats/publishing/1.2/xmlchars/isogrk1.ent | 70 + .../jats/publishing/1.2/xmlchars/isogrk2.ent | 41 + .../jats/publishing/1.2/xmlchars/isogrk4.ent | 66 + schema/jats/publishing/1.2/xsd/.DS_Store | Bin 0 -> 6148 bytes ...TS-journalpublishing1-mathml3-elements.xsd | 9237 ++++++++++++++ .../xsd/JATS-journalpublishing1-mathml3.xsd | 48 + .../1.2/xsd/standard-modules/.DS_Store | Bin 0 -> 6148 bytes .../mathml3/mathml3-common.xsd | 101 + .../mathml3/mathml3-content.xsd | 683 ++ .../mathml3/mathml3-presentation.xsd | 2092 ++++ .../mathml3/mathml3-strict-content.xsd | 186 + .../xsd/standard-modules/mathml3/mathml3.xsd | 9 + .../1.2/xsd/standard-modules/module-ali.xsd | 46 + .../1.2/xsd/standard-modules/xlink.xsd | 100 + .../1.2/xsd/standard-modules/xml.xsd | 287 + .../publishing/1.3/BITS-embedded-index2.ent | 308 + .../publishing/1.3/BITS-question-answer2.ent | 531 + .../1.3/JATS-XHTMLtablesetup1-3.ent | 629 + .../publishing/1.3/JATS-ali-namespace1-3.ent | 293 + .../publishing/1.3/JATS-articlemeta1-3.ent | 2552 ++++ .../publishing/1.3/JATS-backmatter1-3.ent | 540 + schema/jats/publishing/1.3/JATS-chars1-3.ent | 664 + .../publishing/1.3/JATS-common-atts1-3.ent | 360 + schema/jats/publishing/1.3/JATS-common1-3.ent | 4659 +++++++ .../1.3/JATS-default-classes1-3.ent | 1595 +++ .../publishing/1.3/JATS-default-mixes1-3.ent | 630 + .../jats/publishing/1.3/JATS-display1-3.ent | 1299 ++ schema/jats/publishing/1.3/JATS-format1-3.ent | 997 ++ .../jats/publishing/1.3/JATS-funding1-3.ent | 1100 ++ .../publishing/1.3/JATS-journalmeta1-3.ent | 593 + .../1.3/JATS-journalpubcustom-classes1-3.ent | 467 + .../1.3/JATS-journalpubcustom-mixes1-3.ent | 397 + .../1.3/JATS-journalpubcustom-models1-3.ent | 1341 ++ .../1.3/JATS-journalpubcustom-modules1-3.ent | 404 + .../1.3/JATS-journalpublishing1-3-mathml3.dtd | 1105 ++ schema/jats/publishing/1.3/JATS-link1-3.ent | 604 + schema/jats/publishing/1.3/JATS-list1-3.ent | 663 + schema/jats/publishing/1.3/JATS-math1-3.ent | 563 + .../1.3/JATS-mathml3-mathmlsetup1-3.ent | 493 + .../1.3/JATS-mathml3-modules1-3.ent | 333 + .../jats/publishing/1.3/JATS-modules1-3.ent | 769 ++ .../publishing/1.3/JATS-nlmcitation1-3.ent | 428 + schema/jats/publishing/1.3/JATS-notat1-3.ent | 412 + schema/jats/publishing/1.3/JATS-para1-3.ent | 648 + schema/jats/publishing/1.3/JATS-phrase1-3.ent | 664 + .../publishing/1.3/JATS-references1-3.ent | 1428 +++ .../publishing/1.3/JATS-related-object1-3.ent | 435 + .../jats/publishing/1.3/JATS-section1-3.ent | 463 + .../publishing/1.3/JATS-xmlspecchars1-3.ent | 528 + .../1.3/catalog-jats-v1-3-no-base.xml | 999 ++ .../1.3/catalog-jats-v1-3-with-base.xml | 986 ++ schema/jats/publishing/1.3/iso8879/isobox.ent | 61 + .../jats/publishing/1.3/iso8879/isocyr1.ent | 88 + .../jats/publishing/1.3/iso8879/isocyr2.ent | 47 + schema/jats/publishing/1.3/iso8879/isodia.ent | 35 + .../jats/publishing/1.3/iso8879/isolat1.ent | 83 + .../jats/publishing/1.3/iso8879/isolat2.ent | 142 + schema/jats/publishing/1.3/iso8879/isonum.ent | 97 + schema/jats/publishing/1.3/iso8879/isopub.ent | 105 + .../publishing/1.3/iso9573-13/isoamsa.ent | 167 + .../publishing/1.3/iso9573-13/isoamsb.ent | 143 + .../publishing/1.3/iso9573-13/isoamsc.ent | 43 + .../publishing/1.3/iso9573-13/isoamsn.ent | 114 + .../publishing/1.3/iso9573-13/isoamso.ent | 73 + .../publishing/1.3/iso9573-13/isoamsr.ent | 204 + .../publishing/1.3/iso9573-13/isogrk3.ent | 64 + .../publishing/1.3/iso9573-13/isomfrk.ent | 75 + .../publishing/1.3/iso9573-13/isomopf.ent | 49 + .../publishing/1.3/iso9573-13/isomscr.ent | 75 + .../publishing/1.3/iso9573-13/isotech.ent | 182 + .../jats/publishing/1.3/mathml/mmlalias.ent | 564 + .../jats/publishing/1.3/mathml/mmlextra.ent | 122 + schema/jats/publishing/1.3/mathml3-qname1.mod | 294 + schema/jats/publishing/1.3/mathml3.dtd | 1682 +++ .../jats/publishing/1.3/xhtml-inlstyle-1.mod | 34 + schema/jats/publishing/1.3/xhtml-table-1.mod | 333 + .../jats/publishing/1.3/xmlchars/isogrk1.ent | 70 + .../jats/publishing/1.3/xmlchars/isogrk2.ent | 41 + .../jats/publishing/1.3/xmlchars/isogrk4.ent | 66 + ...-journalpublishing1-3-mathml3-elements.xsd | 10129 ++++++++++++++++ .../xsd/JATS-journalpublishing1-3-mathml3.xsd | 45 + .../standard-modules/mathml3/OLD-pattern.xml | 7 + .../mathml3/mathml3-common.xsd | 104 + .../mathml3/mathml3-content.xsd | 683 ++ .../mathml3/mathml3-presentation.xsd | 2092 ++++ .../mathml3/mathml3-strict-content.xsd | 186 + .../xsd/standard-modules/mathml3/mathml3.xsd | 9 + .../1.3/xsd/standard-modules/module-ali.xsd | 46 + .../1.3/xsd/standard-modules/xlink.xsd | 100 + .../1.3/xsd/standard-modules/xml.xsd | 287 + tests/validate.sh | 2 + 153 files changed, 95107 insertions(+), 1 deletion(-) create mode 100644 schema/jats/publishing/1.2/BITS-embedded-index2.ent create mode 100644 schema/jats/publishing/1.2/JATS-XHTMLtablesetup1.ent create mode 100644 schema/jats/publishing/1.2/JATS-ali-namespace1.ent create mode 100644 schema/jats/publishing/1.2/JATS-articlemeta1.ent create mode 100644 schema/jats/publishing/1.2/JATS-backmatter1.ent create mode 100644 schema/jats/publishing/1.2/JATS-chars1.ent create mode 100644 schema/jats/publishing/1.2/JATS-common-atts1.ent create mode 100644 schema/jats/publishing/1.2/JATS-common1.ent create mode 100644 schema/jats/publishing/1.2/JATS-default-classes1.ent create mode 100644 schema/jats/publishing/1.2/JATS-default-mixes1.ent create mode 100644 schema/jats/publishing/1.2/JATS-display1.ent create mode 100644 schema/jats/publishing/1.2/JATS-format1.ent create mode 100644 schema/jats/publishing/1.2/JATS-funding1.ent create mode 100644 schema/jats/publishing/1.2/JATS-journalmeta1.ent create mode 100644 schema/jats/publishing/1.2/JATS-journalpubcustom-classes1.ent create mode 100644 schema/jats/publishing/1.2/JATS-journalpubcustom-mixes1.ent create mode 100644 schema/jats/publishing/1.2/JATS-journalpubcustom-models1.ent create mode 100644 schema/jats/publishing/1.2/JATS-journalpubcustom-modules1.ent create mode 100644 schema/jats/publishing/1.2/JATS-journalpublishing1-mathml3.dtd create mode 100644 schema/jats/publishing/1.2/JATS-link1.ent create mode 100644 schema/jats/publishing/1.2/JATS-list1.ent create mode 100644 schema/jats/publishing/1.2/JATS-math1.ent create mode 100644 schema/jats/publishing/1.2/JATS-mathml3-mathmlsetup1.ent create mode 100644 schema/jats/publishing/1.2/JATS-mathml3-modules1.ent create mode 100644 schema/jats/publishing/1.2/JATS-modules1.ent create mode 100644 schema/jats/publishing/1.2/JATS-nlmcitation1.ent create mode 100644 schema/jats/publishing/1.2/JATS-notat1.ent create mode 100644 schema/jats/publishing/1.2/JATS-para1.ent create mode 100644 schema/jats/publishing/1.2/JATS-phrase1.ent create mode 100644 schema/jats/publishing/1.2/JATS-references1.ent create mode 100644 schema/jats/publishing/1.2/JATS-related-object1.ent create mode 100644 schema/jats/publishing/1.2/JATS-section1.ent create mode 100644 schema/jats/publishing/1.2/JATS-xmlspecchars1.ent create mode 100644 schema/jats/publishing/1.2/catalog-jats-v1-2-no-base.xml create mode 100644 schema/jats/publishing/1.2/catalog-jats-v1-2-with-base.xml create mode 100644 schema/jats/publishing/1.2/iso8879/isobox.ent create mode 100644 schema/jats/publishing/1.2/iso8879/isocyr1.ent create mode 100644 schema/jats/publishing/1.2/iso8879/isocyr2.ent create mode 100644 schema/jats/publishing/1.2/iso8879/isodia.ent create mode 100644 schema/jats/publishing/1.2/iso8879/isolat1.ent create mode 100644 schema/jats/publishing/1.2/iso8879/isolat2.ent create mode 100644 schema/jats/publishing/1.2/iso8879/isonum.ent create mode 100644 schema/jats/publishing/1.2/iso8879/isopub.ent create mode 100644 schema/jats/publishing/1.2/iso9573-13/isoamsa.ent create mode 100644 schema/jats/publishing/1.2/iso9573-13/isoamsb.ent create mode 100644 schema/jats/publishing/1.2/iso9573-13/isoamsc.ent create mode 100644 schema/jats/publishing/1.2/iso9573-13/isoamsn.ent create mode 100644 schema/jats/publishing/1.2/iso9573-13/isoamso.ent create mode 100644 schema/jats/publishing/1.2/iso9573-13/isoamsr.ent create mode 100644 schema/jats/publishing/1.2/iso9573-13/isogrk3.ent create mode 100644 schema/jats/publishing/1.2/iso9573-13/isomfrk.ent create mode 100644 schema/jats/publishing/1.2/iso9573-13/isomopf.ent create mode 100644 schema/jats/publishing/1.2/iso9573-13/isomscr.ent create mode 100644 schema/jats/publishing/1.2/iso9573-13/isotech.ent create mode 100644 schema/jats/publishing/1.2/mathml/mmlalias.ent create mode 100644 schema/jats/publishing/1.2/mathml/mmlextra.ent create mode 100644 schema/jats/publishing/1.2/mathml3-qname1.mod create mode 100644 schema/jats/publishing/1.2/mathml3.dtd create mode 100644 schema/jats/publishing/1.2/xhtml-inlstyle-1.mod create mode 100644 schema/jats/publishing/1.2/xhtml-table-1.mod create mode 100644 schema/jats/publishing/1.2/xmlchars/isogrk1.ent create mode 100644 schema/jats/publishing/1.2/xmlchars/isogrk2.ent create mode 100644 schema/jats/publishing/1.2/xmlchars/isogrk4.ent create mode 100644 schema/jats/publishing/1.2/xsd/.DS_Store create mode 100644 schema/jats/publishing/1.2/xsd/JATS-journalpublishing1-mathml3-elements.xsd create mode 100644 schema/jats/publishing/1.2/xsd/JATS-journalpublishing1-mathml3.xsd create mode 100644 schema/jats/publishing/1.2/xsd/standard-modules/.DS_Store create mode 100644 schema/jats/publishing/1.2/xsd/standard-modules/mathml3/mathml3-common.xsd create mode 100644 schema/jats/publishing/1.2/xsd/standard-modules/mathml3/mathml3-content.xsd create mode 100644 schema/jats/publishing/1.2/xsd/standard-modules/mathml3/mathml3-presentation.xsd create mode 100644 schema/jats/publishing/1.2/xsd/standard-modules/mathml3/mathml3-strict-content.xsd create mode 100644 schema/jats/publishing/1.2/xsd/standard-modules/mathml3/mathml3.xsd create mode 100644 schema/jats/publishing/1.2/xsd/standard-modules/module-ali.xsd create mode 100644 schema/jats/publishing/1.2/xsd/standard-modules/xlink.xsd create mode 100644 schema/jats/publishing/1.2/xsd/standard-modules/xml.xsd create mode 100755 schema/jats/publishing/1.3/BITS-embedded-index2.ent create mode 100755 schema/jats/publishing/1.3/BITS-question-answer2.ent create mode 100755 schema/jats/publishing/1.3/JATS-XHTMLtablesetup1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-ali-namespace1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-articlemeta1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-backmatter1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-chars1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-common-atts1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-common1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-default-classes1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-default-mixes1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-display1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-format1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-funding1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-journalmeta1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-journalpubcustom-classes1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-journalpubcustom-mixes1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-journalpubcustom-models1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-journalpubcustom-modules1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-journalpublishing1-3-mathml3.dtd create mode 100755 schema/jats/publishing/1.3/JATS-link1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-list1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-math1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-mathml3-mathmlsetup1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-mathml3-modules1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-modules1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-nlmcitation1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-notat1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-para1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-phrase1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-references1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-related-object1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-section1-3.ent create mode 100755 schema/jats/publishing/1.3/JATS-xmlspecchars1-3.ent create mode 100755 schema/jats/publishing/1.3/catalog-jats-v1-3-no-base.xml create mode 100755 schema/jats/publishing/1.3/catalog-jats-v1-3-with-base.xml create mode 100755 schema/jats/publishing/1.3/iso8879/isobox.ent create mode 100755 schema/jats/publishing/1.3/iso8879/isocyr1.ent create mode 100755 schema/jats/publishing/1.3/iso8879/isocyr2.ent create mode 100755 schema/jats/publishing/1.3/iso8879/isodia.ent create mode 100755 schema/jats/publishing/1.3/iso8879/isolat1.ent create mode 100755 schema/jats/publishing/1.3/iso8879/isolat2.ent create mode 100755 schema/jats/publishing/1.3/iso8879/isonum.ent create mode 100755 schema/jats/publishing/1.3/iso8879/isopub.ent create mode 100755 schema/jats/publishing/1.3/iso9573-13/isoamsa.ent create mode 100755 schema/jats/publishing/1.3/iso9573-13/isoamsb.ent create mode 100755 schema/jats/publishing/1.3/iso9573-13/isoamsc.ent create mode 100755 schema/jats/publishing/1.3/iso9573-13/isoamsn.ent create mode 100755 schema/jats/publishing/1.3/iso9573-13/isoamso.ent create mode 100755 schema/jats/publishing/1.3/iso9573-13/isoamsr.ent create mode 100755 schema/jats/publishing/1.3/iso9573-13/isogrk3.ent create mode 100755 schema/jats/publishing/1.3/iso9573-13/isomfrk.ent create mode 100755 schema/jats/publishing/1.3/iso9573-13/isomopf.ent create mode 100755 schema/jats/publishing/1.3/iso9573-13/isomscr.ent create mode 100755 schema/jats/publishing/1.3/iso9573-13/isotech.ent create mode 100755 schema/jats/publishing/1.3/mathml/mmlalias.ent create mode 100755 schema/jats/publishing/1.3/mathml/mmlextra.ent create mode 100755 schema/jats/publishing/1.3/mathml3-qname1.mod create mode 100755 schema/jats/publishing/1.3/mathml3.dtd create mode 100755 schema/jats/publishing/1.3/xhtml-inlstyle-1.mod create mode 100755 schema/jats/publishing/1.3/xhtml-table-1.mod create mode 100755 schema/jats/publishing/1.3/xmlchars/isogrk1.ent create mode 100755 schema/jats/publishing/1.3/xmlchars/isogrk2.ent create mode 100755 schema/jats/publishing/1.3/xmlchars/isogrk4.ent create mode 100755 schema/jats/publishing/1.3/xsd/JATS-journalpublishing1-3-mathml3-elements.xsd create mode 100755 schema/jats/publishing/1.3/xsd/JATS-journalpublishing1-3-mathml3.xsd create mode 100755 schema/jats/publishing/1.3/xsd/standard-modules/mathml3/OLD-pattern.xml create mode 100755 schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3-common.xsd create mode 100755 schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3-content.xsd create mode 100755 schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3-presentation.xsd create mode 100755 schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3-strict-content.xsd create mode 100755 schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3.xsd create mode 100755 schema/jats/publishing/1.3/xsd/standard-modules/module-ali.xsd create mode 100755 schema/jats/publishing/1.3/xsd/standard-modules/xlink.xsd create mode 100755 schema/jats/publishing/1.3/xsd/standard-modules/xml.xsd diff --git a/schema/Makefile b/schema/Makefile index ecff493..9f50821 100644 --- a/schema/Makefile +++ b/schema/Makefile @@ -15,7 +15,7 @@ $(DOWNLOADS): # JATS DTD -jats: | jats/publishing/1.0 jats/publishing/1.1 +jats: | jats/publishing/1.0 jats/publishing/1.1 jats/publishing/1.2 jats/publishing/1.3 # JATS 1.0 @@ -47,6 +47,35 @@ $(DOWNLOADS)/JATS-Publishing-1-1-MathML2-DTD.zip: | $(DOWNLOADS) $(DOWNLOADS)/JATS-Publishing-1-1-MathML2-XSD.zip: | $(DOWNLOADS) wget -c -P $(DOWNLOADS) ftp://ftp.ncbi.nih.gov/pub/jats/publishing/1.1/xsd/JATS-Publishing-1-1-MathML2-XSD.zip +jats/publishing/1.2: | $(DOWNLOADS)/JATS-Publishing-1-2-MathML3-DTD.zip $(DOWNLOADS)/JATS-Publishing-1-2-MathML3-XSD.zip + mkdir -p jats/publishing/1.2 + unzip $(DOWNLOADS)/JATS-Publishing-1-2-MathML3-DTD.zip -d $(DOWNLOADS) + mv $(DOWNLOADS)/JATS-Publishing-1-2-MathML3-DTD/ jats/publishing/1.2 + + unzip $(DOWNLOADS)/JATS-Publishing-1-2-MathML3-XSD.zip -d $(DOWNLOADS) + mv $(DOWNLOADS)/JATS-Publishing-1-2-MathML3-XSD jats/publishing/1.2/xsd + + +$(DOWNLOADS)/JATS-Publishing-1-2-MathML3-DTD.zip: | $(DOWNLOADS) + wget -c -P $(DOWNLOADS) ftp://ftp.ncbi.nih.gov/pub/jats/publishing/1.2/JATS-Publishing-1-2-MathML3-DTD.zip + +$(DOWNLOADS)/JATS-Publishing-1-2-MathML3-XSD.zip: | $(DOWNLOADS) + wget -c -P $(DOWNLOADS) ftp://ftp.ncbi.nih.gov/pub/jats/publishing/1.2/xsd/JATS-Publishing-1-2-MathML3-XSD.zip + +jats/publishing/1.3: | $(DOWNLOADS)/JATS-Publishing-1-3-MathML3-DTD.zip $(DOWNLOADS)/JATS-Publishing-1-3-MathML3-XSD.zip + mkdir -p jats/publishing/1.3 + unzip $(DOWNLOADS)/JATS-Publishing-1-3-MathML3-DTD.zip -d $(DOWNLOADS) + mv $(DOWNLOADS)/JATS-Publishing-1-3-MathML3-DTD/ jats/publishing/1.3 + + unzip $(DOWNLOADS)/JATS-Publishing-1-3-MathML3-XSD.zip -d $(DOWNLOADS) + mv $(DOWNLOADS)/JATS-Publishing-1-3-MathML3-XSD jats/publishing/1.3/xsd + +$(DOWNLOADS)/JATS-Publishing-1-3-MathML3-DTD.zip: | $(DOWNLOADS) + wget -c -P $(DOWNLOADS) ftp://ftp.ncbi.nih.gov/pub/jats/publishing/1.3/JATS-Publishing-1-3-MathML3-DTD.zip + +$(DOWNLOADS)/JATS-Publishing-1-3-MathML3-XSD.zip: | $(DOWNLOADS) + wget -c -P $(DOWNLOADS) ftp://ftp.ncbi.nih.gov/pub/jats/publishing/1.3/xsd/JATS-Publishing-1-3-MathML3-XSD.zip + # CrossRef Schema, this is now being hosted on gitlab, the zip includes examples, which we don't copy crossref: | crossref/schematron.xsl (DOWNLOADS)/schema-0.1.1.zip mkdir -p crossref diff --git a/schema/catalog.xml b/schema/catalog.xml index aaa9f6b..52f345e 100644 --- a/schema/catalog.xml +++ b/schema/catalog.xml @@ -12,4 +12,6 @@ + + diff --git a/schema/jats/publishing/1.2/BITS-embedded-index2.ent b/schema/jats/publishing/1.2/BITS-embedded-index2.ent new file mode 100644 index 0000000..b019d83 --- /dev/null +++ b/schema/jats/publishing/1.2/BITS-embedded-index2.ent @@ -0,0 +1,323 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.2/JATS-XHTMLtablesetup1.ent b/schema/jats/publishing/1.2/JATS-XHTMLtablesetup1.ent new file mode 100644 index 0000000..d695cb2 --- /dev/null +++ b/schema/jats/publishing/1.2/JATS-XHTMLtablesetup1.ent @@ -0,0 +1,587 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +%xhtml-inlstyle-1.mod; + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +%xhtml-table-1.mod; + + + + + + + + + + diff --git a/schema/jats/publishing/1.2/JATS-ali-namespace1.ent b/schema/jats/publishing/1.2/JATS-ali-namespace1.ent new file mode 100644 index 0000000..4b530a2 --- /dev/null +++ b/schema/jats/publishing/1.2/JATS-ali-namespace1.ent @@ -0,0 +1,240 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/schema/jats/publishing/1.2/JATS-articlemeta1.ent b/schema/jats/publishing/1.2/JATS-articlemeta1.ent new file mode 100644 index 0000000..09172f9 --- /dev/null +++ b/schema/jats/publishing/1.2/JATS-articlemeta1.ent @@ -0,0 +1,2251 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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a/schema/jats/publishing/1.2/iso9573-13/isoamsa.ent b/schema/jats/publishing/1.2/iso9573-13/isoamsa.ent new file mode 100644 index 0000000..c413168 --- /dev/null +++ b/schema/jats/publishing/1.2/iso9573-13/isoamsa.ent @@ -0,0 +1,167 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.2/iso9573-13/isoamsb.ent b/schema/jats/publishing/1.2/iso9573-13/isoamsb.ent new file mode 100644 index 0000000..b74414b --- /dev/null +++ b/schema/jats/publishing/1.2/iso9573-13/isoamsb.ent @@ -0,0 +1,143 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.2/iso9573-13/isoamsc.ent b/schema/jats/publishing/1.2/iso9573-13/isoamsc.ent new file mode 100644 index 0000000..46ea221 --- /dev/null +++ b/schema/jats/publishing/1.2/iso9573-13/isoamsc.ent @@ -0,0 +1,43 @@ + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.2/iso9573-13/isoamsn.ent b/schema/jats/publishing/1.2/iso9573-13/isoamsn.ent new file mode 100644 index 0000000..a1df8b7 --- /dev/null +++ b/schema/jats/publishing/1.2/iso9573-13/isoamsn.ent @@ -0,0 +1,114 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.2/iso9573-13/isoamso.ent b/schema/jats/publishing/1.2/iso9573-13/isoamso.ent new file mode 100644 index 0000000..f99cf11 --- /dev/null +++ b/schema/jats/publishing/1.2/iso9573-13/isoamso.ent @@ -0,0 +1,73 @@ + 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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.2/iso9573-13/isomfrk.ent b/schema/jats/publishing/1.2/iso9573-13/isomfrk.ent new file mode 100644 index 0000000..0e1a943 --- /dev/null +++ b/schema/jats/publishing/1.2/iso9573-13/isomfrk.ent @@ -0,0 +1,75 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.2/iso9573-13/isomopf.ent b/schema/jats/publishing/1.2/iso9573-13/isomopf.ent new file mode 100644 index 0000000..4b26425 --- /dev/null +++ b/schema/jats/publishing/1.2/iso9573-13/isomopf.ent @@ -0,0 +1,49 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.2/iso9573-13/isomscr.ent b/schema/jats/publishing/1.2/iso9573-13/isomscr.ent new file mode 100644 index 0000000..a2174f0 --- /dev/null +++ b/schema/jats/publishing/1.2/iso9573-13/isomscr.ent @@ -0,0 +1,75 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.2/iso9573-13/isotech.ent b/schema/jats/publishing/1.2/iso9573-13/isotech.ent new file mode 100644 index 0000000..d94c775 --- /dev/null +++ b/schema/jats/publishing/1.2/iso9573-13/isotech.ent @@ -0,0 +1,182 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.2/mathml/mmlalias.ent b/schema/jats/publishing/1.2/mathml/mmlalias.ent new file mode 100644 index 0000000..1371af3 --- /dev/null +++ b/schema/jats/publishing/1.2/mathml/mmlalias.ent @@ -0,0 +1,564 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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diff --git a/schema/jats/publishing/1.2/mathml/mmlextra.ent b/schema/jats/publishing/1.2/mathml/mmlextra.ent new file mode 100644 index 0000000..850c7e7 --- /dev/null +++ b/schema/jats/publishing/1.2/mathml/mmlextra.ent @@ -0,0 +1,122 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.2/mathml3-qname1.mod b/schema/jats/publishing/1.2/mathml3-qname1.mod new file mode 100644 index 0000000..254bdb2 --- /dev/null +++ b/schema/jats/publishing/1.2/mathml3-qname1.mod @@ -0,0 +1,294 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + +]]> + + + + +]]> + + + + +]]> + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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a/schema/jats/publishing/1.2/xmlchars/isogrk4.ent b/schema/jats/publishing/1.2/xmlchars/isogrk4.ent new file mode 100644 index 0000000..097f90e --- /dev/null +++ b/schema/jats/publishing/1.2/xmlchars/isogrk4.ent @@ -0,0 +1,66 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.2/xsd/.DS_Store b/schema/jats/publishing/1.2/xsd/.DS_Store new file mode 100644 index 0000000000000000000000000000000000000000..a53e9d7738561aa523ba3fcd47f22e1fe3e9e5ae GIT binary patch literal 6148 zcmeHKJ5Iw;5S)b+k!Vs4o9@ggP?kl^hj1lR)qsKEo8Sn7Es{TFU+#M!-k@>OUkK7$G z;0;qhy$&zqIC!y43P=GdAO)m=6gW$PYNy+qvu+Vt3P^!VRKULvjqcbL&WZ8qV2BZb zxM4bs>zE~o%@f3~a86`~W=SO`)oR4Bq%+^Dt}C1qlMbul!|KUa6N<&td4G#?SeK|M z1*E`If$QAvy#GJY|Cs-mB<-Yt6u2k_Y;$-#?D j(T=(Cc6=K}S=W5c^R94C3_9~cC+cUwb&*Md|5o4!Ue_0$ literal 0 HcmV?d00001 diff --git a/schema/jats/publishing/1.2/xsd/JATS-journalpublishing1-mathml3-elements.xsd b/schema/jats/publishing/1.2/xsd/JATS-journalpublishing1-mathml3-elements.xsd new file mode 100644 index 0000000..c93412b --- /dev/null +++ b/schema/jats/publishing/1.2/xsd/JATS-journalpublishing1-mathml3-elements.xsd @@ -0,0 +1,9237 @@ + + + + +
+

MODULE: JATS-journalpublishing1-mathml3 DTD in XSD form (declarations file)

+

MODEL: Journal Publishing DTD (MathML 3.0)

+

VERSION: 1.2

+

DATE: February 2019

+
+
SYSTEM
+
+

Journal Publishing model of the JATS Suite

+
+
PURPOSE
+
+

Declare elements with names which are not + namespace-qualified

+
+
CREATED FOR
+
+

NLM/NCBI

+
+ +
+
+ + + + + + + + + + +
+

Abbreviation or Acronym

+
+ + + + + + + + + + + + + + + + + + + + + + + +
+

Abbreviated Journal Title

+
+ + + + + + + + + + + + + + + + +
+

Abstract

+
+ + + + + + + + + + + + + + +
+

Access Date For Cited Work

+
+ + + + + + + + + + + + + + + + + +
+

Acknowledgments

+
+ + + + + + + + + + + + + + +
+

Address Line

+
+ + + + + + + + + + + + + + + + +
+

Address/Contact Information

+
+ + + + + + + + + + + + + + +
+

Affiliation

+
+ + + + + + + + + + + + + + + + + +
+

Affiliation Alternatives

+
+ + + + + + + + + + + +
+

Alternate Title Text For a Figure, Etc.

+
+ + + + + + + + + + + + + + +
+

Alternate Title

+
+ + + + + + + + + + + + + + + + +
+

Alternatives For Processing

+
+ + + + + + + + + + + +
+

Annotation in a Citation

+
+ + + + + + + + + + + + + + +
+

Anonymous

+
+ + + + + + + + + + + + +
+

Appendix

+
+ + + + + + + + + + + + + + +
+

Appendix Group

+
+ + + + + + + + + + + + + + +
+

Array (Simple Tabular Array)

+
+ + + + + + + + + + + + + + + + + + + + + + + + + +
+

Article

+
+ + + + + + + + + + + + + + + +
+

Article Grouping Data

+
+ + + + + + + + + + + +
+

Article Identifier

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Article Metadata

+
+ + + + + + + + + + + +
+

Article Title

+
+ + + + + + + + + + + + + + +
+

Article Version

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Article Version Alternatives

+
+ + + + + + + + + + + + + +
+

Attribution

+
+ + + + + + + + + + + + + + + +
+

Author Comment

+
+ + + + + + + + + + + + + + +
+

Author Note Group

+
+ + + + + + + + + + + + + +
+

Award Group

+
+ + + + + + + + + + + + + + + + + + + + + +
+

Award Identifier

+
+ + + + + + + + + + + + + + + + + + + + + + + +
+

Back Matter

+
+ + + + + + + + + + + +
+

Biography

+
+ + + + + + + + + + + + + + + + + + + + + +
+

Body of the Article

+
+ + + + + + + + + + + + +
+

Bold

+
+ + + + + + + + + + + + + + + + + + + + + + + + + +
+

Boxed Text

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Line Break

+
+ + + + + + + + + + +
+

Caption of a Figure, Table, Etc.

+
+ + + + + + + + + + + + + + + +
+

Chapter Title in a Citation

+
+ + + + + + + + + + + + + + + +
+

Chemical Structure (Display)

+
+ + + + + + + + + + + + + + + + + + + + +
+

Chemical Structure Wrapper

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Citation Alternatives

+
+ + + + + + + + + + + +
+

City: in an Address

+
+ + + + + + + + + + + + + + + + +
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Code Text

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Collaborative (Group) Author

+
+ + + + + + + + + + + + + + + + + + + + + + + +
+

Collaboration Alternatives

+
+ + + + + + + + + + + +
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Comment in a Citation

+
+ + + + + + + + + + + + + + + + +
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Compound Keyword

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+ + + + + + + + + + + + + + + + +
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Compound Keyword Part

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+ + + + + + + + + + + + + + +
+

Compound Subject Name

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+ + + + + + + + + + + + + + + + +
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Compound Subject Part Name

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+ + + + + + + + + + + + + + +
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Conference Acronym

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+ + + + + + + + + + + + + + + + +
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Conference Date

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+ + + + + + + + + + + + + + + + + + +
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Conference Location

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+ + + + + + + + + + + + + + + + +
+

Conference Name

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+ + + + + + + + + + + + + + + + +
+

Conference Number

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+ + + + + + + + + + + + + + + + +
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Conference Sponsor

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+ + + + + + + + + + + + + + + + +
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Conference Theme

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Conference Information

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Contributor

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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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Contributor Group

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Contributor Identifier

+
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Contributed Resource Group

+
+ + + + + + + + + + + + + + +
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Copyright Holder

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+ + + + + + + + + + + + + + + + +
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Copyright Statement

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+ + + + + + + + + + + + + + + + +
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Copyright Year

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Correspondence Information

+
+ + + + + + + + + + + + + + + + +
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Count

+
+ + + + + + + + + + + + +
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Country: in an Address

+
+ + + + + + + + + + + + + + + + + +
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Counts

+
+ + + + + + + + + + + +
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Custom Metadata

+
+ + + + + + + + + + + + + + + + + + + +
+

Custom Metadata Group

+
+ + + + + + + + + + + +
+

Data Title in a Citation

+
+ + + + + + + + + + + + + + + + +
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Date

+
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Date Inside Citation

+
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Day

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Definition List: Definition

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Definition List: Definition Head

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Definition List: Definition Item

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Definition List

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Degree(s)

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Formula, Display

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Formula, Display Group

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Quote, Displayed

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Edition Statement, Cited

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Element Citation

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Electronic Location Identifier

+
+ + + + + + + + + + + + + + +
+

Email Address

+
+ + + + + + + + + + + + + + + + + + + + + + +
+

Equation Count

+
+ + + + + + + + + + + +
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Era

+
+ + + + + + + + + + + + + + +
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Et Al

+
+ + + + + + + + + + + + + +
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Event in Publishing History

+
+ + + + + + + + + + + + + + +
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Event Description

+
+ + + + + + + + + + + + + + + +
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External Link

+
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Fax Number: in an Address

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Figure

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Figure Count

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Figure Group

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Fixed Case

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Floats Group

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+ + + + + + + + + + + +
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Footnote

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Footnote Group

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First Page

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Front Matter

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Stub Front Metadata

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Funding Group

+
+ + + + + + + + + + + + + +
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Funding Source

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Funding Statement

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Given (First) Names

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Glossary Elements

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Glyph Data For a Private Character

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Glyph Reference For a Private Character

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Government Report, Cited

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Graphic

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History: Document History

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Horizontal Rule

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Index Term

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Index Term Range End

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Formula, Inline

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Inline Graphic

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Inline Media Object

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Inline Supplementary Material

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Institution Name: in an Address

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Institution Identifier

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Institution Wrapper

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+ + + + + + + + + + + +
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Isbn

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Issn

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Issn Linking

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Issue Number

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Issue Identifier

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Issue Part

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Issue Title

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Issue Title

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Italic

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Journal Identifier

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Journal Metadata

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Journal Subtitle

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Journal Title (Full)

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Journal Title Group

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Keyword

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Keyword Group

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Label of a Figure, Reference, Etc.

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License Information

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License Paragraph

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List

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List Item

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Long Description

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Last Page

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Media Object

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Metadata Data Name For Custom Metadata

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Metadata Data Value For Custom Metadata

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Milestone End

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Milestone Start

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Mixed Citation

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Monospace Text (Typewriter Text)

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Month

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Name of Person (Structured)

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Name Alternatives

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Named Special (Subject) Content

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+

Nested Keyword

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+ + + + + + + + + + + + + + + + +
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Nlm Citation Model

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Note in a Reference List

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Notes

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Object Identifier

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On Behalf of

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+

Open Access

+
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+

Overline

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Overline End

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Overline Start

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Paragraph

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Page Count

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+ + + + + + + + + + + +
+

Page Ranges

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+

Part Title in a Citation

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+

Patent Number, Cited

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Permissions

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Person Group For a Cited Publication

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Phone Number: in an Address

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Postal Code: in an Address

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Prefix

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Preformatted Text

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Price

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+

Principal Award Recipient

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+

Principal Investigator Recipient

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+

Private Character (Custom or Unicode)

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Product Information

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+

Publication Date

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Date Not Available Flag

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Publication History

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Publication Identifier For a Cited Publication

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Publisher

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Publisher's Location

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Publisher's Name

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Ruby Base

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Reference Item

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Reference Count

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+ + + + + + + + + + + +
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Reference List (Bibliographic Reference List)

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Related Article Information

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Related Object Information

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Resource Group

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Resource Identifier

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Resource Name

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Resource Wrap

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+ + + + + + + + + + + +
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Response

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+ + + + + + + + + + + + + + +
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Role or Function Title of Contributor

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Roman

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+

Ruby Parenthesis

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+ + + + + + + + + + + +
+

Ruby Textual Annotation

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+ + + + + + + + + + + + + + + + +
+

Ruby Wrapper

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+ + + + + + + + + + + + + +
+

Sans Serif

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+

Small Caps

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+

Season

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+ + + + + + + + + + + + + + +
+

Section

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+ + + + + + + + + + + + + + +
+

Section Metadata

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+ + + + + + + + + + + +
+

See

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+ + + + + + + + + + + + + + + + + +
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See-Also Term

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Uri For This Same Article Online

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Series

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Series Text: Header Text to Describe

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Series Title

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Signature

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Signature Block

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Size

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+ + + + + + + + + + + + + + + + +
+

Source

+
+ + + + + + + + + + + + + + + + +
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Speaker

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+ + + + + + + + + + + + + + + + +
+

Speech

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State or Province: in an Address

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+

Statement, Formal

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Standard, Cited

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Standards Organization

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Strike Through

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String Conference Name

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Date As a String

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Name of Person (Unstructured)

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Styled Special (Subject) Content

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Subscript

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Sub-Article

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Subject Name

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+ + + + + + + + + + + + + + + + + + +
+

Article Subtitle

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+

Suffix

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+ + + + + + + + + + + + + + + + +
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Superscript

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Supplement

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Supplementary Material

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+

Support Description

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+ + + + + + + + + + + + + + + + +
+

Support Group

+
+ + + + + + + + + + + + + +
+

Support Source

+
+ + + + + + + + + + + + + + + + + + + + + + + + +
+

Surname

+
+ + + + + + + + + + + + + + +
+

Table: Table Element ..............................

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+

Table Count

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+ + + + + + + + + + + +
+

Table Wrapper

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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Table Wrap Footer

+
+ + + + + + + + + + + +
+

Table Wrapper Group

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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Target of an Internal Link

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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Definition List: Term

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+ + + + + + + + + + + + + + + + + + + + + + +
+

Definition List: Term Head

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+ + + + + + + + + + + + + +
+

Tex Math Equation

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+

Textual Form

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Time Stamp For Cited Work

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+ + + + + + + + + + + + + + + +
+

Title

+
+ + + + + + + + + + + + + + + +
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Title Group

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+

Translated Abstract

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+

Translated Source

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+

Translated Subtitle

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+

Translated Title

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+

Translated Title Group

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Underline

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Underline End

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+

Underline Start

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+

Unstructured Keyword Group

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+

Uri

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+

Verse Form For Poetry

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Line of a Verse

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Version Statement, Cited

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Volume Number

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Volume Identifier

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Translated Title Group

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+

Volume Series

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+ + + + + + + + + + + + + + + + +
+

Word Count

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+ + + + + + + + + + + +
+

X - Generated Text and Punctuation

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+ + + + + + + + + + + + + + + + + +
+

X(cross) Reference

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b/schema/jats/publishing/1.2/xsd/JATS-journalpublishing1-mathml3.xsd @@ -0,0 +1,48 @@ + + + + +
+

MODULE: JATS-journalpublishing1-mathml3 DTD in XSD form (driver file)

+

MODEL: Journal Publishing DTD (MathML 3.0)

+

VERSION: 1.2

+

DATE: February 2019

+ +
+
SYSTEM
+
+

Journal Publishing model of the JATS Suite

+
+
PURPOSE
+
+

Driver file: include and import all other schema documents

+
+
CREATED FOR
+
+

NLM/NCBI

+
+ +
+
+ + + + + + + + + diff --git a/schema/jats/publishing/1.2/xsd/standard-modules/.DS_Store b/schema/jats/publishing/1.2/xsd/standard-modules/.DS_Store new file mode 100644 index 0000000000000000000000000000000000000000..79c481cb409a5a8d8c56df423fd269b1347700bf GIT binary patch literal 6148 zcmeHKIc~#13?v-^G2ljJ%Kbv%4=fD%1^GY{yGS8JMdDtS-<79jcp!)%xiZ`YLx7xJ zilfC&A&MfRyYul`q!p1h+)yqS=4Q{$XST|W0^xYaNqX5HKM(!;Fsoip821spH~Er} zzx<(JCNN6{r~nn90#tws+@yf@Uf6mQ$VdgK02TOEz`hR!Zden?K>u_g_y_=Okaok` zX9-}j1h6KKfylr#sKB6Vju;wr + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/schema/jats/publishing/1.2/xsd/standard-modules/mathml3/mathml3-content.xsd b/schema/jats/publishing/1.2/xsd/standard-modules/mathml3/mathml3-content.xsd new file mode 100644 index 0000000..d7c75c6 --- /dev/null +++ b/schema/jats/publishing/1.2/xsd/standard-modules/mathml3/mathml3-content.xsd @@ -0,0 +1,683 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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No newline at end of file diff --git a/schema/jats/publishing/1.2/xsd/standard-modules/mathml3/mathml3-strict-content.xsd b/schema/jats/publishing/1.2/xsd/standard-modules/mathml3/mathml3-strict-content.xsd new file mode 100644 index 0000000..869de61 --- /dev/null +++ b/schema/jats/publishing/1.2/xsd/standard-modules/mathml3/mathml3-strict-content.xsd @@ -0,0 +1,186 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/schema/jats/publishing/1.2/xsd/standard-modules/mathml3/mathml3.xsd b/schema/jats/publishing/1.2/xsd/standard-modules/mathml3/mathml3.xsd new file mode 100644 index 0000000..283c31e --- /dev/null +++ b/schema/jats/publishing/1.2/xsd/standard-modules/mathml3/mathml3.xsd @@ -0,0 +1,9 @@ + + + + + + \ No newline at end of file diff --git a/schema/jats/publishing/1.2/xsd/standard-modules/module-ali.xsd b/schema/jats/publishing/1.2/xsd/standard-modules/module-ali.xsd new file mode 100644 index 0000000..146266e --- /dev/null +++ b/schema/jats/publishing/1.2/xsd/standard-modules/module-ali.xsd @@ -0,0 +1,46 @@ + + + + + + + + +
+

Free to Read (Niso Ali)

+
+ + + + + + + + + + + + + + +
+

License Reference (Niso Ali)

+
+ + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.2/xsd/standard-modules/xlink.xsd b/schema/jats/publishing/1.2/xsd/standard-modules/xlink.xsd new file mode 100644 index 0000000..1b69cdc --- /dev/null +++ b/schema/jats/publishing/1.2/xsd/standard-modules/xlink.xsd @@ -0,0 +1,100 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.2/xsd/standard-modules/xml.xsd b/schema/jats/publishing/1.2/xsd/standard-modules/xml.xsd new file mode 100644 index 0000000..aea7d0d --- /dev/null +++ b/schema/jats/publishing/1.2/xsd/standard-modules/xml.xsd @@ -0,0 +1,287 @@ + + + + + + +
+

About the XML namespace

+ +
+

+ This schema document describes the XML namespace, in a form + suitable for import by other schema documents. +

+

+ See + http://www.w3.org/XML/1998/namespace.html and + + http://www.w3.org/TR/REC-xml for information + about this namespace. +

+

+ Note that local names in this namespace are intended to be + defined only by the World Wide Web Consortium or its subgroups. + The names currently defined in this namespace are listed below. + They should not be used with conflicting semantics by any Working + Group, specification, or document instance. +

+

+ See further below in this document for more information about how to refer to this schema document from your own + XSD schema documents and about the + namespace-versioning policy governing this schema document. +

+
+
+ + + + + + +
+ +

lang (as an attribute name)

+

+ denotes an attribute whose value + is a language code for the natural language of the content of + any element; its value is inherited. This name is reserved + by virtue of its definition in the XML specification.

+ +
+
+

Notes

+

+ Attempting to install the relevant ISO 2- and 3-letter + codes as the enumerated possible values is probably never + going to be a realistic possibility. +

+

+ See BCP 47 at + http://www.rfc-editor.org/rfc/bcp/bcp47.txt + and the IANA language subtag registry at + + http://www.iana.org/assignments/language-subtag-registry + for further information. +

+

+ The union allows for the 'un-declaration' of xml:lang with + the empty string. +

+
+ + + + + + + + + + + + + + + + +
+ +

space (as an attribute name)

+

+ denotes an attribute whose + value is a keyword indicating what whitespace processing + discipline is intended for the content of the element; its + value is inherited. This name is reserved by virtue of its + definition in the XML specification.

+ +
+ + + + + + + + + + + + +
+ +

base (as an attribute name)

+

+ denotes an attribute whose value + provides a URI to be used as the base for interpreting any + relative URIs in the scope of the element on which it + appears; its value is inherited. This name is reserved + by virtue of its definition in the XML Base specification.

+ +

+ See http://www.w3.org/TR/xmlbase/ + for information about this attribute. +

+
+ + + + + + + +
+ +

id (as an attribute name)

+

+ denotes an attribute whose value + should be interpreted as if declared to be of type ID. + This name is reserved by virtue of its definition in the + xml:id specification.

+ +

+ See http://www.w3.org/TR/xml-id/ + for information about this attribute. +

+
+ + + + + + + + + + + + + +
+ +

Father (in any context at all)

+ +
+

+ denotes Jon Bosak, the chair of + the original XML Working Group. This name is reserved by + the following decision of the W3C XML Plenary and + XML Coordination groups: +

+
+

+ In appreciation for his vision, leadership and + dedication the W3C XML Plenary on this 10th day of + February, 2000, reserves for Jon Bosak in perpetuity + the XML name "xml:Father". +

+
+
+
+ + + + + +
+

About this schema document

+ +
+

+ This schema defines attributes and an attribute group suitable + for use by schemas wishing to allow xml:base, + xml:lang, xml:space or + xml:id attributes on elements they define. +

+

+ To enable this, such a schema must import this schema for + the XML namespace, e.g. as follows: +

+ 
+          <schema . . .>
+           . . .
+           <import namespace="http://www.w3.org/XML/1998/namespace"
+                      schemaLocation="http://www.w3.org/2001/xml.xsd"/>
+
+

+ or +

+ 
+           <import namespace="http://www.w3.org/XML/1998/namespace"
+                      schemaLocation="http://www.w3.org/2009/01/xml.xsd"/>
+
+

+ Subsequently, qualified reference to any of the attributes or the + group defined below will have the desired effect, e.g. +

+ 
+          <type . . .>
+           . . .
+           <attributeGroup ref="xml:specialAttrs"/>
+
+

+ will define a type which will schema-validate an instance element + with any of those attributes. +

+
+
+ + + + + +
+

Versioning policy for this schema document

+
+

+ In keeping with the XML Schema WG's standard versioning + policy, this schema document will persist at + + http://www.w3.org/2009/01/xml.xsd. +

+

+ At the date of issue it can also be found at + + http://www.w3.org/2001/xml.xsd. +

+

+ The schema document at that URI may however change in the future, + in order to remain compatible with the latest version of XML + Schema itself, or with the XML namespace itself. In other words, + if the XML Schema or XML namespaces change, the version of this + document at + http://www.w3.org/2001/xml.xsd + + will change accordingly; the version at + + http://www.w3.org/2009/01/xml.xsd + + will not change. +

+

+ Previous dated (and unchanging) versions of this schema + document are at: +

+ +
+
+ + + + + diff --git a/schema/jats/publishing/1.3/BITS-embedded-index2.ent b/schema/jats/publishing/1.3/BITS-embedded-index2.ent new file mode 100755 index 0000000..b613ec3 --- /dev/null +++ b/schema/jats/publishing/1.3/BITS-embedded-index2.ent @@ -0,0 +1,308 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.3/BITS-question-answer2.ent b/schema/jats/publishing/1.3/BITS-question-answer2.ent new file mode 100755 index 0000000..b92a958 --- /dev/null +++ b/schema/jats/publishing/1.3/BITS-question-answer2.ent @@ -0,0 +1,531 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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b/schema/jats/publishing/1.3/mathml3-qname1.mod @@ -0,0 +1,294 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + +]]> + + + + +]]> + + + + +]]> + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.3/mathml3.dtd b/schema/jats/publishing/1.3/mathml3.dtd new file mode 100755 index 0000000..9f8a953 --- /dev/null +++ b/schema/jats/publishing/1.3/mathml3.dtd @@ -0,0 +1,1682 @@ + + + + + + + + + + + + + + +%mathml-qname.mod;]]> + + + +]]> + + + + + + +%isobox; + +%isocyr1; + +%isocyr2; + +%isodia; + +%isolat1; + +%isolat2; + +%isonum; + +%isopub; + +%isoamsa; + +%isoamsb; + +%isoamsc; + +%isoamsn; + +%isoamso; + +%isoamsr; + +%isogrk3; + +%isomfrk; + +%isomopf; + +%isomscr; + +%isotech; + +%mmlextra; + +%mmlalias; + +]]> + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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b/schema/jats/publishing/1.3/xhtml-inlstyle-1.mod @@ -0,0 +1,34 @@ + + + + + + + + + + + + \ No newline at end of file diff --git a/schema/jats/publishing/1.3/xhtml-table-1.mod b/schema/jats/publishing/1.3/xhtml-table-1.mod new file mode 100755 index 0000000..0cf9bcd --- /dev/null +++ b/schema/jats/publishing/1.3/xhtml-table-1.mod @@ -0,0 +1,333 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +]]> + + + +]]> + + + + + + +]]> + + + +]]> + + + + + + + + +]]> + + + +]]> + + + + + + + + +]]> + + + +]]> + + + + + + + + +]]> + + + +]]> + + + + + + + + +]]> + + + +]]> + + + + + + + + +]]> + + + +]]> + + + + + + +]]> + + + +]]> + + + + + + + + +]]> + + + +]]> + + + + + + +]]> + + + +]]> + + \ No newline at end of file diff --git a/schema/jats/publishing/1.3/xmlchars/isogrk1.ent b/schema/jats/publishing/1.3/xmlchars/isogrk1.ent new file mode 100755 index 0000000..1ed96fa --- /dev/null +++ b/schema/jats/publishing/1.3/xmlchars/isogrk1.ent @@ -0,0 +1,70 @@ + + + + + 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b/schema/jats/publishing/1.3/xsd/JATS-journalpublishing1-3-mathml3-elements.xsd @@ -0,0 +1,10129 @@ + + + + +
+

MODULE: JATS-journalpublishing1-3-mathml3 DTD in XSD form (declarations file)

+

MODEL: Journal Publishing DTD (MathML 3.0)

+

VERSION: 1.3

+

DATE: June 2021

+
+
SYSTEM
+
+

Journal Publishing model of the JATS Suite

+
+
PURPOSE
+
+

Declare elements with names which are not + namespace-qualified

+
+
CREATED FOR
+
+

NLM/NCBI

+
+
+
+ + + + + + + + + + +
+

Abbreviation or Acronym

+
+ + + + + + + + + + + + + + + + + + + + + + + + +
+

Abbreviated Journal Title

+
+ + + + + + + + + + + + + + + + +
+

Abstract

+
+ + + + + + + + + + + + + + +
+

Access Date For Cited Work

+
+ + + + + + + + + + + + + + + + + +
+

Acknowledgments

+
+ + + + + + + + + + + + + + +
+

Address Line

+
+ + + + + + + + + + + + + + + + +
+

Address/Contact Information

+
+ + + + + + + + + + + + + + +
+

Affiliation

+
+ + + + + + + + + + + + + + + + + +
+

Affiliation Alternatives

+
+ + + + + + + + + + + +
+

Alternate Title Text For a Figure, Etc.

+
+ + + + + + + + + + + + + + +
+

Alternate Title

+
+ + + + + + + + + + + + + + + + +
+

Alternatives For Processing

+
+ + + + + + + + + + + +
+

Annotation in a Citation

+
+ + + + + + + + + + + + + + +
+

Anonymous

+
+ + + + + + + + + + + + +
+

Answer Elements

+
+ + + + + + + + + + + + + + + +
+

Answer Set

+
+ + + + + + + + + + + + + + +
+

Appendix

+
+ + + + + + + + + + + + + + +
+

Appendix Group

+
+ + + + + + + + + + + + + + +
+

Array (Simple Tabular Array)

+
+ + + + + + + + + + + + + + + + + + + + + + + + + +
+

Article

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Article Grouping Data

+
+ + + + + + + + + + + +
+

Article Identifier

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Article Metadata

+
+ + + + + + + + + + + +
+

Article Title

+
+ + + + + + + + + + + + + + +
+

Article Version

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Article Version Alternatives

+
+ + + + + + + + + + + + + +
+

Attribution

+
+ + + + + + + + + + + + + + + +
+

Author Comment

+
+ + + + + + + + + + + + + + +
+

Author Note Group

+
+ + + + + + + + + + + + + +
+

Award Description

+
+ + + + + + + + + + + + + + + + + + + + + +
+

Award Group

+
+ + + + + + + + + + + + + + + + + + + + + + +
+

Award Identifier

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Award Name

+
+ + + + + + + + + + + + + + + + + + + + + +
+

Back Matter

+
+ + + + + + + + + + + +
+

Biography

+
+ + + + + + + + + + + + + + + + + + + + + + +
+

Block-Level Alternatives For Processing

+
+ + + + + + + + + + + +
+

Body of the Article

+
+ + + + + + + + + + + + +
+

Bold

+
+ + + + + + + + + + + + + + + + + + + + + + + + + +
+

Boxed Text

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Line Break

+
+ + + + + + + + + + +
+

Caption of a Figure, Table, Etc.

+
+ + + + + + + + + + + + + + + +
+

Chapter Title in a Citation

+
+ + + + + + + + + + + + + + + +
+

Chemical Structure (Display)

+
+ + + + + + + + + + + + + + + + + + + + + +
+

Chemical Structure Wrapper

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Citation Alternatives

+
+ + + + + + + + + + + +
+

City: in an Address

+
+ + + + + + + + + + + + + + + + +
+

Code Text

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Collaborative (Group) Author

+
+ + + + + + + + + + + + + + + + + + + + + + + + +
+

Collaboration Alternatives

+
+ + + + + + + + + + + +
+

Comment in a Citation

+
+ + + + + + + + + + + + + + + + +
+

Compound Keyword

+
+ + + + + + + + + + + + + + + + + +
+

Compound Keyword Part

+
+ + + + + + + + + + + + + + +
+

Compound Subject Name

+
+ + + + + + + + + + + + + + + + + +
+

Compound Subject Part Name

+
+ + + + + + + + + + + + + + +
+

Conference Acronym

+
+ + + + + + + + + + + + + + + + +
+

Conference Date

+
+ + + + + + + + + + + + + + + + + + +
+

Conference Location

+
+ + + + + + + + + + + + + + + + +
+

Conference Name

+
+ + + + + + + + + + + + + + + + +
+

Conference Number

+
+ + + + + + + + + + + + + + + + +
+

Conference Sponsor

+
+ + + + + + + + + + + + + + + + +
+

Conference Theme

+
+ + + + + + + + + + + + + + + + +
+

Conference Information

+
+ + + + + + + + + + + + + + + + + + + + + +
+

Contributor

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Contributor Group

+
+ + + + + + + + + + + + + +
+

Contributor Identifier

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Contributed Resource Group

+
+ + + + + + + + + + + + + + +
+

Copyright Holder

+
+ + + + + + + + + + + + + + + + +
+

Copyright Statement

+
+ + + + + + + + + + + + + + + + +
+

Copyright Year

+
+ + + + + + + + + + + + + +
+

Correspondence Information

+
+ + + + + + + + + + + + + + + + +
+

Count

+
+ + + + + + + + + + + + +
+

Country: in an Address

+
+ + + + + + + + + + + + + + + + + +
+

Counts

+
+ + + + + + + + + + + +
+

Custom Metadata

+
+ + + + + + + + + + + + + + + + + + + + + + + + + +
+

Custom Metadata Group

+
+ + + + + + + + + + + + + + +
+

Data Title in a Citation

+
+ + + + + + + + + + + + + + + + +
+

Date

+
+ + + + + + + + + + + + + + + + +
+

Date Inside Citation

+
+ + + + + + + + + + + + + + + + + + +
+

Day

+
+ + + + + + + + + + + + + + +
+

Definition List: Definition

+
+ + + + + + + + + + + + + + +
+

Definition List: Definition Head

+
+ + + + + + + + + + + + + +
+

Definition List: Definition Item

+
+ + + + + + + + + + + + + +
+

Definition List

+
+ + + + + + + + + + + + + + + + + +
+

Degree(s)

+
+ + + + + + + + + + + + + + + + +
+

Formula, Display

+
+ + + + + + + + + + + + + + +
+

Formula, Display Group

+
+ + + + + + + + + + + + + + +
+

Quote, Displayed

+
+ + + + + + + + + + + + + + +
+

Edition Statement, Cited

+
+ + + + + + + + + + + + + + + + + +
+

Element Citation

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Electronic Location Identifier

+
+ + + + + + + + + + + + + + +
+

Email Address

+
+ + + + + + + + + + + + + + + + + + + + + + + +
+

Equation Count

+
+ + + + + + + + + + + +
+

Era

+
+ + + + + + + + + + + + + + +
+

Et Al

+
+ + + + + + + + + + + + + +
+

Event in Publishing History

+
+ + + + + + + + + + + + + + +
+

Event Description

+
+ + + + + + + + + + + + + + + +
+

Explanation

+
+ + + + + + + + + + + + + + + +
+

External Link

+
+ + + + + + + + + + + + + + + + + + + + + + + + +
+

Extended-by Model

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Fax Number: in an Address

+
+ + + + + + + + + + + + + + + +
+

Figure

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Figure Count

+
+ + + + + + + + + + + +
+

Figure Group

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Fixed Case

+
+ + + + + + + + + + + + + + + +
+

Floats Group

+
+ + + + + + + + + + + +
+

Footnote

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Footnote Group

+
+ + + + + + + + + + + + + + +
+

First Page

+
+ + + + + + + + + + + + + + + +
+

Front Matter

+
+ + + + + + + + + + + +
+

Stub Front Metadata

+
+ + + + + + + + + + + +
+

Funding Group

+
+ + + + + + + + + + + + + +
+

Funding Source

+
+ + + + + + + + + + + + + + + + + + + + + + + + + +
+

Funding Statement

+
+ + + + + + + + + + + + + + + + +
+

Given (First) Names

+
+ + + + + + + + + + + + + + +
+

Glossary Elements

+
+ + + + + + + + + + + + + + +
+

Glyph Data For a Private Character

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Glyph Reference For a Private Character

+
+ + + + + + + + + + + + + +
+

Government Report, Cited

+
+ + + + + + + + + + + + + + + + +
+

Graphic

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

History: Document History

+
+ + + + + + + + + + + +
+

Horizontal Rule

+
+ + + + + + + + + + +
+

Index Term

+
+ + + + + + + + + + + + + + + + + + + +
+

Index Term Range End

+
+ + + + + + + + + + + +
+

Formula, Inline

+
+ + + + + + + + + + + + + + +
+

Inline Graphic

+
+ + + + + + + + + + + + + + + + + + + + + + + + +
+

Inline Media Object

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

Inline Supplementary Material

+
+ + + + + + + + + + + + + + + + + + + + + + + + + +
+

Institution Name: in an Address

+
+ + + + + + + + + + + + + + + + + + + + + + + +
+

Institution Identifier

+
+ + + + + + + + + + + + + + + + + + +
+

Institution Wrapper

+
+ + + + + + + + + + + +
+

Isbn

+
+ + + + + + + + + + + + + + + + + +
+

Issn

+
+ + + + + + + + + + + + + + + + + + +
+

Issn Linking

+
+ + + + + + + + + + + + + + + +
+

Issue Number

+
+ + + + + + + + + + + + + + + + + +
+

Issue Identifier

+
+ + + + + + + + + + + + + + + + + + + + + + + +
+

Issue Part

+
+ + + + + + + + + + + + + + + + +
+

Issue Title

+
+ + + + + + + + + + + + + + + + +
+

Issue Subtitle

+
+ + + + + + + + + + + + + + + + +
+

Issue Title

+
+ + + + + + + + + + + + + + + + +
+

Issue Title Group

+
+ + + + + + + + + + + + + + +
+

Italic

+
+ + + + + + + + + + + + + + + + + + + + + + + + + +
+

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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.3/xsd/JATS-journalpublishing1-3-mathml3.xsd b/schema/jats/publishing/1.3/xsd/JATS-journalpublishing1-3-mathml3.xsd new file mode 100755 index 0000000..6680b17 --- /dev/null +++ b/schema/jats/publishing/1.3/xsd/JATS-journalpublishing1-3-mathml3.xsd @@ -0,0 +1,45 @@ + + + + +
+

MODULE: JATS-journalpublishing1-3-mathml3 DTD in XSD form (driver file)

+

MODEL: Journal Publishing DTD (MathML 3.0)

+

VERSION: 1.3

+

DATE: June 2021

+
+
SYSTEM
+
+

Journal Publishing model of the JATS Suite

+
+
PURPOSE
+
+

Driver file: include and import all other schema documents

+
+
CREATED FOR
+
+

NLM/NCBI

+
+
+
+ + + + + + + + diff --git a/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/OLD-pattern.xml b/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/OLD-pattern.xml new file mode 100755 index 0000000..4d71880 --- /dev/null +++ b/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/OLD-pattern.xml @@ -0,0 +1,7 @@ + + \ No newline at end of file diff --git a/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3-common.xsd b/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3-common.xsd new file mode 100755 index 0000000..86b8590 --- /dev/null +++ b/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3-common.xsd @@ -0,0 +1,104 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3-content.xsd b/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3-content.xsd new file mode 100755 index 0000000..d7c75c6 --- /dev/null +++ b/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3-content.xsd @@ -0,0 +1,683 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3-presentation.xsd b/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3-presentation.xsd new file mode 100755 index 0000000..8f6e1d0 --- /dev/null +++ b/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3-presentation.xsd @@ -0,0 +1,2092 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3-strict-content.xsd b/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3-strict-content.xsd new file mode 100755 index 0000000..869de61 --- /dev/null +++ b/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3-strict-content.xsd @@ -0,0 +1,186 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3.xsd b/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3.xsd new file mode 100755 index 0000000..283c31e --- /dev/null +++ b/schema/jats/publishing/1.3/xsd/standard-modules/mathml3/mathml3.xsd @@ -0,0 +1,9 @@ + + + + + + \ No newline at end of file diff --git a/schema/jats/publishing/1.3/xsd/standard-modules/module-ali.xsd b/schema/jats/publishing/1.3/xsd/standard-modules/module-ali.xsd new file mode 100755 index 0000000..146266e --- /dev/null +++ b/schema/jats/publishing/1.3/xsd/standard-modules/module-ali.xsd @@ -0,0 +1,46 @@ + + + + + + + + +
+

Free to Read (Niso Ali)

+
+ + + + + + + + + + + + + + +
+

License Reference (Niso Ali)

+
+ + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.3/xsd/standard-modules/xlink.xsd b/schema/jats/publishing/1.3/xsd/standard-modules/xlink.xsd new file mode 100755 index 0000000..1b69cdc --- /dev/null +++ b/schema/jats/publishing/1.3/xsd/standard-modules/xlink.xsd @@ -0,0 +1,100 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/schema/jats/publishing/1.3/xsd/standard-modules/xml.xsd b/schema/jats/publishing/1.3/xsd/standard-modules/xml.xsd new file mode 100755 index 0000000..aea7d0d --- /dev/null +++ b/schema/jats/publishing/1.3/xsd/standard-modules/xml.xsd @@ -0,0 +1,287 @@ + + + + + + +
+

About the XML namespace

+ +
+

+ This schema document describes the XML namespace, in a form + suitable for import by other schema documents. +

+

+ See + http://www.w3.org/XML/1998/namespace.html and + + http://www.w3.org/TR/REC-xml for information + about this namespace. +

+

+ Note that local names in this namespace are intended to be + defined only by the World Wide Web Consortium or its subgroups. + The names currently defined in this namespace are listed below. + They should not be used with conflicting semantics by any Working + Group, specification, or document instance. +

+

+ See further below in this document for more information about how to refer to this schema document from your own + XSD schema documents and about the + namespace-versioning policy governing this schema document. +

+
+
+ + + + + + +
+ +

lang (as an attribute name)

+

+ denotes an attribute whose value + is a language code for the natural language of the content of + any element; its value is inherited. This name is reserved + by virtue of its definition in the XML specification.

+ +
+
+

Notes

+

+ Attempting to install the relevant ISO 2- and 3-letter + codes as the enumerated possible values is probably never + going to be a realistic possibility. +

+

+ See BCP 47 at + http://www.rfc-editor.org/rfc/bcp/bcp47.txt + and the IANA language subtag registry at + + http://www.iana.org/assignments/language-subtag-registry + for further information. +

+

+ The union allows for the 'un-declaration' of xml:lang with + the empty string. +

+
+ + + + + + + + + + + + + + + + +
+ +

space (as an attribute name)

+

+ denotes an attribute whose + value is a keyword indicating what whitespace processing + discipline is intended for the content of the element; its + value is inherited. This name is reserved by virtue of its + definition in the XML specification.

+ +
+ + + + + + + + + + + + +
+ +

base (as an attribute name)

+

+ denotes an attribute whose value + provides a URI to be used as the base for interpreting any + relative URIs in the scope of the element on which it + appears; its value is inherited. This name is reserved + by virtue of its definition in the XML Base specification.

+ +

+ See http://www.w3.org/TR/xmlbase/ + for information about this attribute. +

+
+ + + + + + + +
+ +

id (as an attribute name)

+

+ denotes an attribute whose value + should be interpreted as if declared to be of type ID. + This name is reserved by virtue of its definition in the + xml:id specification.

+ +

+ See http://www.w3.org/TR/xml-id/ + for information about this attribute. +

+
+ + + + + + + + + + + + + +
+ +

Father (in any context at all)

+ +
+

+ denotes Jon Bosak, the chair of + the original XML Working Group. This name is reserved by + the following decision of the W3C XML Plenary and + XML Coordination groups: +

+
+

+ In appreciation for his vision, leadership and + dedication the W3C XML Plenary on this 10th day of + February, 2000, reserves for Jon Bosak in perpetuity + the XML name "xml:Father". +

+
+
+
+ + + + + +
+

About this schema document

+ +
+

+ This schema defines attributes and an attribute group suitable + for use by schemas wishing to allow xml:base, + xml:lang, xml:space or + xml:id attributes on elements they define. +

+

+ To enable this, such a schema must import this schema for + the XML namespace, e.g. as follows: +

+ 
+          <schema . . .>
+           . . .
+           <import namespace="http://www.w3.org/XML/1998/namespace"
+                      schemaLocation="http://www.w3.org/2001/xml.xsd"/>
+
+

+ or +

+ 
+           <import namespace="http://www.w3.org/XML/1998/namespace"
+                      schemaLocation="http://www.w3.org/2009/01/xml.xsd"/>
+
+

+ Subsequently, qualified reference to any of the attributes or the + group defined below will have the desired effect, e.g. +

+ 
+          <type . . .>
+           . . .
+           <attributeGroup ref="xml:specialAttrs"/>
+
+

+ will define a type which will schema-validate an instance element + with any of those attributes. +

+
+
+ + + + + +
+

Versioning policy for this schema document

+
+

+ In keeping with the XML Schema WG's standard versioning + policy, this schema document will persist at + + http://www.w3.org/2009/01/xml.xsd. +

+

+ At the date of issue it can also be found at + + http://www.w3.org/2001/xml.xsd. +

+

+ The schema document at that URI may however change in the future, + in order to remain compatible with the latest version of XML + Schema itself, or with the XML namespace itself. In other words, + if the XML Schema or XML namespaces change, the version of this + document at + http://www.w3.org/2001/xml.xsd + + will change accordingly; the version at + + http://www.w3.org/2009/01/xml.xsd + + will not change. +

+

+ Previous dated (and unchanging) versions of this schema + document are at: +

+ +
+
+ + + + + diff --git a/tests/validate.sh b/tests/validate.sh index c871442..aa5d45a 100755 --- a/tests/validate.sh +++ b/tests/validate.sh @@ -29,6 +29,8 @@ xmllint --loaddtd --valid --nonet $TRACE --noout --catalogs "$ARTICLE" echo "Validating against JATS XSD" # TODO: detect version or add option xmllint --nonet $TRACE --noout --catalogs --schema 'http://jats.nlm.nih.gov/publishing/1.1/xsd/JATS-journalpublishing1.xsd' "$ARTICLE" +#xmllint --nonet $TRACE --noout --catalogs --schema 'http://jats.nlm.nih.gov/publishing/1.2/xsd/JATS-journalpublishing1.xsd' "$ARTICLE" +#xmllint --nonet $TRACE --noout --catalogs --schema 'http://jats.nlm.nih.gov/publishing/1.3/xsd/JATS-journalpublishing1.xsd' "$ARTICLE" DEPOSITION="$OUTPUT_DIR/$FILE-CrossRef-DOI-deposition.xml" echo "Creating CrossRef DOI deposition - $DEPOSITION"