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protein inference example revise
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lindayong committed Jun 29, 2021
1 parent 30b072e commit 6bd3844
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Expand Up @@ -337,7 +337,7 @@
"tokenizer = ProteinTokenizer()\n",
"examples = [\n",
" 'MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR',\n",
" 'CCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGACGACAAGACCAACGTCAAGGCCGCCTGGGGTAAGGTCGGCGCGCACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTTCCTGTCCTTCCCCACCACCAAGACCTACTTCCCGCACTTCGACCTGAGCCACGGCTCTGCCCAGGTTAAGGGCCACGGCAAGAAGGTGGCCGACGCGCTGACCAACGCCGTGGCGCACGTGGACGACATGCCCAACGCGCTGTCCGCCCTGAGCGACCTGCACGCGCACAAGCTTCGGGTGGACCCGGTCAACTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCTCCCCGCCGAGTTCACCCCTGCGGTGCACGCCTCCCTGGACAAGTTCCTGGCTTCTGTGAGCACCGTGCTGACCTCCAAATACCGTTAAGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTTGG',\n",
" 'KQHTSRGYLHEFDGDPANRCHQSLYKWHDKDCDWLVDWEMKPMDALMETDHQPSMLVHLEQSYKWFCCIKGKPLNFAALLDGWTKITPMAKALYWRDHISEAWLIQCMFEEKILIVRTLMDENGTHKNYFVMSRLCGSCITFEWDSWEAEKPHKVWMGMKNCVSWKRKDVIEMVFERTQWAKWADNIYNWACCPMQVPEIIPFQFFYQTDENFCFKLLMKPCKFYYFSCHHLGHLHCLLKYQWYKGVYLGMRLRVFHKMIVCFHGHWTWVEGNSGIEGRGGIMMHTGITMDCFFDRNIQQSYGGSRWSEQNMKHSQHSRCDPYRTCEPEGTTPEQKCVQRQRIKVRVCHMPEDCLWTSCV',\n",
"]\n",
"\n",
"example_ids = [tokenizer.gen_token_ids(example) for example in examples]\n",
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Original file line number Diff line number Diff line change
Expand Up @@ -329,7 +329,7 @@
"tokenizer = ProteinTokenizer()\n",
"examples = [\n",
" 'MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR',\n",
" 'CCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGACGACAAGACCAACGTCAAGGCCGCCTGGGGTAAGGTCGGCGCGCACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTTCCTGTCCTTCCCCACCACCAAGACCTACTTCCCGCACTTCGACCTGAGCCACGGCTCTGCCCAGGTTAAGGGCCACGGCAAGAAGGTGGCCGACGCGCTGACCAACGCCGTGGCGCACGTGGACGACATGCCCAACGCGCTGTCCGCCCTGAGCGACCTGCACGCGCACAAGCTTCGGGTGGACCCGGTCAACTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCTCCCCGCCGAGTTCACCCCTGCGGTGCACGCCTCCCTGGACAAGTTCCTGGCTTCTGTGAGCACCGTGCTGACCTCCAAATACCGTTAAGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTTGG',\n",
" 'KQHTSRGYLHEFDGDPANRCHQSLYKWHDKDCDWLVDWEMKPMDALMETDHQPSMLVHLEQSYKWFCCIKGKPLNFAALLDGWTKITPMAKALYWRDHISEAWLIQCMFEEKILIVRTLMDENGTHKNYFVMSRLCGSCITFEWDSWEAEKPHKVWMGMKNCVSWKRKDVIEMVFERTQWAKWADNIYNWACCPMQVPEIIPFQFFYQTDENFCFKLLMKPCKFYYFSCHHLGHLHCLLKYQWYKGVYLGMRLRVFHKMIVCFHGHWTWVEGNSGIEGRGGIMMHTGITMDCFFDRNIQQSYGGSRWSEQNMKHSQHSRCDPYRTCEPEGTTPEQKCVQRQRIKVRVCHMPEDCLWTSCV',\n",
"]\n",
"\n",
"example_ids = [tokenizer.gen_token_ids(example) for example in examples]\n",
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