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Mouse strain in hbp_taxonomy_ontology #118

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MFSY opened this issue Mar 13, 2018 · 1 comment

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MFSY commented Mar 13, 2018

Mouse strain are referenced in the taxonomy ontology but without real identifiers (HBP_TAX is used and it maps to http://www.hbp.FIXME.org/hbp_taxonomy_ontology).

How the referenced mouse strain are related to MGI database. Looks like yes according to what is discussed here (for rat though).

I made a search and get:

http://www.informatics.jax.org/downloads/reports/MGI_Strain.rpt

Is this relevant or do we have mouse strain in NIFSTD

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tgbugs commented Mar 13, 2018 •

edited

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Mouse strains will be going in to NIFSTD. See SciCrunch/NIF-Ontology#70 (comment).

The way that they are modelled in https://github.com/OpenKnowledgeSpace/methodsOntology/blob/master/ttl/hbp_taxonomy_ontology.ttl is incorrect because most of the strain identifiers are not actually for organisms, but for genotypes. More discussion at the linked comment.

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