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Description:
I encountered an error while running dwifslpreproc in the micapipe processing pipeline. Here's a detailed description of the issue along with my troubleshooting steps.
dwifslpreproc: [ERROR] eddy* --imain=eddy_in.nii --mask=eddy_mask.nii --acqp=eddy_config.txt --index=eddy_indices.txt --bvecs=bvecs --bvals=bvals --data_is_shelled --slm=linear --repol --out=dwi_post_eddy --verbose (app.py:197)
dwifslpreproc: [ERROR] Information from failed command:
dwifslpreproc:
============
eddy_cuda9.1
============
===========
eddy_openmp
===========
Reading images
Performing volume-to-volume registration
...
eddy_cuda9.1: error while loading shared libraries: libcudart.so.9.1: cannot open shared object file: No such file or directory
Troubleshooting Steps:
Investigating Log Output:
The log indicated an issue with loading libcudart.so.9.1 shared library.
Examining Container Contents:
I explored the container using Singularity:
singularity shell micapipe.sif
cd /opt/
find . | grep libcudart # No libcudart.so.9.1 found
Environment Details:
Operating System: CentOS 7
Container Version: micapipe:v0.2.3
Conclusion:
It appears that the required libcudart.so.9.1 shared library is missing in the container environment. This absence leads to the failure of the eddy_cuda9.1 command within dwifslpreproc. I'm looking for guidance on how to resolve this issue or obtain the necessary library to ensure successful execution of the pipeline.
The text was updated successfully, but these errors were encountered:
Description:
I encountered an error while running
dwifslpreproc
in themicapipe
processing pipeline. Here's a detailed description of the issue along with my troubleshooting steps.Error Message:
Upon executing the command:
The error message was:
Troubleshooting Steps:
Investigating Log Output:
libcudart.so.9.1
shared library.Examining Container Contents:
Environment Details:
Conclusion:
It appears that the required
libcudart.so.9.1
shared library is missing in the container environment. This absence leads to the failure of theeddy_cuda9.1
command withindwifslpreproc
. I'm looking for guidance on how to resolve this issue or obtain the necessary library to ensure successful execution of the pipeline.The text was updated successfully, but these errors were encountered: