-
Notifications
You must be signed in to change notification settings - Fork 0
/
index_code.html
194 lines (174 loc) · 5.76 KB
/
index_code.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<title>MICA Lab</title>
<meta name="description" content="Multimodal Imaging and Connectome Analysis">
<meta name="author" content="[email protected]">
<meta name="viewport" content="width=device-width, initial-scale=1">
<!--[if lt IE 9]><script src="//cdnjs.cloudflare.com/ajax/libs/html5shiv/3.7.2/html5shiv.min.js"></script><script src="//cdnjs.cloudflare.com/ajax/libs/respond.js/1.4.2/respond.min.js"></script><![endif]-->
<link rel="stylesheet" href="assets/base.css">
<link rel="stylesheet" href="fixed-navigation-bar.css">
<link href='https://fonts.googleapis.com/css?family=Roboto:500,400,300,200,100' rel='stylesheet' type='text/css'>
<link rel="shortcut icon" href="http://sixrevisions.com/favicon.ico">
</head>
<body>
<nav class="fixed-nav-bar">
<div id="menu" class="menu">
<a class="sitename" href="index_code.html">MICA-CODEBASE</a>
<!-- Example responsive navigation menu -->
<a class="show" href="#menu">Menu</a><a class="hide" href="#hidemenu">Menu</a>
<ul class="menu-items">
<li><a href="#mpc">MPC</a></li>
<li><a href="#gradients">GRADIENTS</a></li>
<li><a href="#surfstat">SURFSTAT</a></li>
<li><a href="#pipelines">PIPELINES</a></li>
<li><a href="index.html">>MICA</a></li>
</ul>
</div>
</nav>
<section class="content2">
<div class="description">
<h3></h3>
<p class="summary2"></p>
</div>
</section>
<section class="some-related-articles">
</br>
</br>
<h1 id="about">CODEBASE</h1>
<p>Thank you for using our tools!</br>
</section>
<section class="some-related-articles">
<h1 id="MPC">MPC </h1>
<center>
<table style="width:100%">
<tr>
<td style="width:350px; text-align:center">
<h2>MPC: Microstructural profile covariance</h2>
<p>
The microstructural profile covariance (MPC) framework models human brain networks based on similarity in microstructural profiles sampled in the direction of cortical columns (For details see Paquola et al. 2018 BioRxiv). It can be used on based on an ultra-high-resolution histological reconstruction of post-mortem brains (such as BigBrain) and via myelin-sensitive MRI data (such as the data provided by the HCP).
</p>
<p>
The detailed step by step procedure is provided on the github (click github symbol
below).</p>
<p>
Generate equivolumetric surfaces between the two cortical interfaces
(using 01_constructSurfaces.sh).
</p>
<p>
These surfaces are then used for systematic intracortical intensity sampling (using
02_myelinMaptoSurf.sh). </p>
<p>
Finally, surfToMPC.m generates MPC martrices that can be analyzed
appropriately.
</p>
</td>
</tr>
<tr>
<td style="width:350px; text-align:center">
<a href="http://github.com/MICA-MNI/micaopen/MPC" target="_blank">
<img src="assets/github.gif" width="40px"/>
</td>
</tr>
</table>
</center>
</section>
<section class="some-related-articles">
<div class="description">
<h3 id="gradients">GRADIENTS</h3>
<center>
<table style="width:100%">
<tr>
<td style="width:350px; text-align:center">
<h2>Here is the gradient tool documentation</a></p>
</td>
</tr>
<tr>
<td style="width:350px; text-align:center">
<a href="http://github.com/MICA-MNI/micaopen/diffusion_map_embedding" target="_blank">
<img src="assets/github.gif" width="40px"/>
</td>
</tr>
</table>
</center>
</section>
<section class="some-related-articles">
<div class="description">
<h3 id="surfstat">SURFSTAT</h3>
<center>
<table style="width:100%">
<tr>
<td style="width:350px; text-align:center">
<h2>Here is the surfstat documentation</a></p>
</td>
</tr>
<tr>
<td style="width:350px; text-align:center">
<a href="http://github.com/MICA-MNI/micaopen/surfstat_chicago" target="_blank">
<img src="assets/github.gif" width="40px"/>
</td>
</tr>
</table>
</center>
</div>
</br>
</br>
</br>
</br>
</section>
<section class="some-related-articles">
<div class="description">
<h1 id="funding">FUNDING</h1>
<p>OUR RESEARCH IS KINDLY SUPPORTED BY</p>
</br>
</br>
<center>
<table style="width:700px">
<tr>
<td style="width:100px">
<img src="assets/sickkids.png" width="80px"/>
</td>
<td style="width:100px">
<img src="assets/cihr.jpg" width="80px"/>
</td>
<td style="width:100px">
<img src="assets/qbin.jpg" width="80px"/>
</td>
<td style="width:100px">
<img src="assets/neuro_final_400.jpg" width="80px"/>
</td>
<td style="width:100px">
<img src="assets/nserc.png" width="80px"/>
</td>
<td style="width:100px">
<img src="assets/frqs.png" width="80px"/>
</td>
</tr>
</table>
</div>
</section>
<section class="content_contact">
<div class="description">
<h3 id="contact">CONTACT</h3>
<p class="summary">Multimodal Imaging and Connectome Analysis Lab</br>
Montreal Neurological Institute and Hospital</br>
3801 University Street, Montreal, QC, H3A 2B4, Canada</br>
<a class="onblue" href="mailto:[email protected]">[email protected]</a></br>
Phone: 514 398 3579</br>
</p>
</br>
</div>
</section>
<section class="content_black">
</br>
<ul class="menu-items-social">
<li><a href="http://github.com/MICA-MNI/" target="_blank"><img src="assets/git_bw_50.gif" height="30px" /></a></li>
<li><a href="https://twitter.com/BorisBernhardt/" target="_blank"><img src="assets/twitter_bw_50.gif" height="30px" /></a></li>
<li><a href="http://www.facebook.com/McConnellBrainImagingCentre/" target="_blank"><img src="assets/fb_bw_50.gif" height="30px" /></a></li>
<li><a href="https://www.researchgate.net/profile/Boris_Bernhardt" target="_blank"><img src="assets/rg_icon.gif" height="30px" /></a></li>
</ul>
</br>
</section>
</body>
</html>