{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":191059942,"defaultBranch":"master","name":"scRNAseq","ownerLogin":"LTLA","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2019-06-09T22:05:30.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/8166669?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1708931351.0","currentOid":""},"activityList":{"items":[{"before":"098395ea8f9037007c25aecfd0bb181b6a55d93f","after":"b80f408bea7d83b3f6b6dac58395eb799f571579","ref":"refs/heads/master","pushedAt":"2024-06-20T19:50:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Incorporate search-related updates from gypsum.\n\nConstruction of complex queries is now easier, with a shorter gsc()\ncommand or via the new human-friendly syntax for search strings.","shortMessageHtmlLink":"Incorporate search-related updates from gypsum."}},{"before":"f7f1f703d3f1ee0383adac5ab6d132c5d61545b1","after":"098395ea8f9037007c25aecfd0bb181b6a55d93f","ref":"refs/heads/master","pushedAt":"2024-06-17T05:09:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Minor docfix for correct linking.","shortMessageHtmlLink":"Minor docfix for correct linking."}},{"before":"c2eebaf5ac3bdcd620c7bccb5c869993efba6b80","after":"f7f1f703d3f1ee0383adac5ab6d132c5d61545b1","ref":"refs/heads/master","pushedAt":"2024-05-17T20:55:38.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"bump x.y.z version to odd y following creation of RELEASE_3_19 branch","shortMessageHtmlLink":"bump x.y.z version to odd y following creation of RELEASE_3_19 branch"}},{"before":"140f6461e4bf168e8d7a9918123ebec15429af65","after":"c2eebaf5ac3bdcd620c7bccb5c869993efba6b80","ref":"refs/heads/master","pushedAt":"2024-04-26T00:11:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Switch to the new formatObjectMetadata function when saving datasets.","shortMessageHtmlLink":"Switch to the new formatObjectMetadata function when saving datasets."}},{"before":"f8a68c46c1e71adbede9e10c19ba0e3e834be46d","after":"140f6461e4bf168e8d7a9918123ebec15429af65","ref":"refs/heads/master","pushedAt":"2024-04-25T14:58:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Fixed G2 phase assignments in the Leng ESC column data.","shortMessageHtmlLink":"Fixed G2 phase assignments in the Leng ESC column data."}},{"before":"2b0b5ea1c5960482b62a3b3fff1106172c58e873","after":"f8a68c46c1e71adbede9e10c19ba0e3e834be46d","ref":"refs/heads/master","pushedAt":"2024-04-23T05:55:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Added a detailed NEWS entry for this traumatic change.","shortMessageHtmlLink":"Added a detailed NEWS entry for this traumatic change."}},{"before":"aa9bfc6aab32b38d032aa304b7c333149555f9f2","after":"2b0b5ea1c5960482b62a3b3fff1106172c58e873","ref":"refs/heads/master","pushedAt":"2024-04-19T06:47:25.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"All alternative experiments are now saved as SCEs, not SEs.\n\nThis allows them to be used in standard analysis pipelines to store size\nfactors, reduced dimensions, etc.","shortMessageHtmlLink":"All alternative experiments are now saved as SCEs, not SEs."}},{"before":"64b296f97cbb5f412fc514c828d0af68b018fb45","after":"aa9bfc6aab32b38d032aa304b7c333149555f9f2","ref":"refs/heads/master","pushedAt":"2024-04-11T06:03:22.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Bumped version and date.","shortMessageHtmlLink":"Bumped version and date."}},{"before":"3d23f4ddc2beaa8faed0af062d7c447254470f22","after":"64b296f97cbb5f412fc514c828d0af68b018fb45","ref":"refs/heads/master","pushedAt":"2024-03-20T01:08:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Back-compatibility changes to the Segerstople colData colnames.\n\nAlso updated the Rmarkdown script to use FTP for speed, and to avoid keeping an\nunnecessary coldata column. Fortunately neither of this actually changes the\noutcome so we don't need to update the underlying files.","shortMessageHtmlLink":"Back-compatibility changes to the Segerstople colData colnames."}},{"before":"091d0d2a4ef4bb0b88a4ffe9193b5d5132b01a3e","after":"3d23f4ddc2beaa8faed0af062d7c447254470f22","ref":"refs/heads/master","pushedAt":"2024-03-20T00:39:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Restore colnames in Zilionis data for back-compatibility.","shortMessageHtmlLink":"Restore colnames in Zilionis data for back-compatibility."}},{"before":"d05f0d172bf72492f3036773d7c81afe08f308a4","after":"091d0d2a4ef4bb0b88a4ffe9193b5d5132b01a3e","ref":"refs/heads/master","pushedAt":"2024-03-15T00:12:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Respect assays= option in the reprocessed getters.","shortMessageHtmlLink":"Respect assays= option in the reprocessed getters."}},{"before":"29d2ab79829415bdf3c10a445f59bf0159d0e6d2","after":"d05f0d172bf72492f3036773d7c81afe08f308a4","ref":"refs/heads/master","pushedAt":"2024-03-13T15:30:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Correct maintainer notes for reviewing new uploads.","shortMessageHtmlLink":"Correct maintainer notes for reviewing new uploads."}},{"before":"eee100356c77f74e7c236568a80bfc158710455f","after":"29d2ab79829415bdf3c10a445f59bf0159d0e6d2","ref":"refs/heads/master","pushedAt":"2024-03-07T23:47:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Minor fix to the Paul getter for proper back-compatibility.","shortMessageHtmlLink":"Minor fix to the Paul getter for proper back-compatibility."}},{"before":"fab62fc446e8418f9033b8e8e0446dbd86287165","after":"eee100356c77f74e7c236568a80bfc158710455f","ref":"refs/heads/master","pushedAt":"2024-03-07T03:49:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Back-compatibility fix for Segerstolpe row data.","shortMessageHtmlLink":"Back-compatibility fix for Segerstolpe row data."}},{"before":"297180679532c2e659d7abb8103df7b67b0c0f0f","after":"fab62fc446e8418f9033b8e8e0446dbd86287165","ref":"refs/heads/master","pushedAt":"2024-03-01T06:50:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Testfix to properly skip uploads from the BBS.","shortMessageHtmlLink":"Testfix to properly skip uploads from the BBS."}},{"before":"3e9c961efc696f62a4c84ff1e9db34ef92de26df","after":"297180679532c2e659d7abb8103df7b67b0c0f0f","ref":"refs/heads/master","pushedAt":"2024-02-27T16:28:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Don't rely on validateMetadata accepting file paths.","shortMessageHtmlLink":"Don't rely on validateMetadata accepting file paths."}},{"before":"fda42bfdfd8e1eba72cecaf273cb4bb74b567202","after":"3e9c961efc696f62a4c84ff1e9db34ef92de26df","ref":"refs/heads/master","pushedAt":"2024-02-27T08:01:59.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Fix upload tests now that uploadDirectory has been moved to gypsum.","shortMessageHtmlLink":"Fix upload tests now that uploadDirectory has been moved to gypsum."}},{"before":"f62be17d608b6271554c81c516550082b2686861","after":"fda42bfdfd8e1eba72cecaf273cb4bb74b567202","ref":"refs/heads/master","pushedAt":"2024-02-27T07:23:27.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"More clean-ups to the upload instructions, added maintainer instructions.","shortMessageHtmlLink":"More clean-ups to the upload instructions, added maintainer instructi…"}},{"before":"8916ffcea8f2930a02712e6907059c5e0b4b1129","after":"f62be17d608b6271554c81c516550082b2686861","ref":"refs/heads/master","pushedAt":"2024-02-27T07:22:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"More clean-ups to the upload instructions, added maintainer instructions.","shortMessageHtmlLink":"More clean-ups to the upload instructions, added maintainer instructi…"}},{"before":"f4f4a7f07b673cfa277303e798c29ed50ed417fa","after":"8916ffcea8f2930a02712e6907059c5e0b4b1129","ref":"refs/heads/master","pushedAt":"2024-02-26T22:43:54.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Further clean-ups to the upload instructions in the vignette.","shortMessageHtmlLink":"Further clean-ups to the upload instructions in the vignette."}},{"before":"c1b47503cd1ae19c2c7343abf20f49414ddc76d6","after":"f4f4a7f07b673cfa277303e798c29ed50ed417fa","ref":"refs/heads/master","pushedAt":"2024-02-26T16:52:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Purged all calls to the (now-deleted) cache moving code.","shortMessageHtmlLink":"Purged all calls to the (now-deleted) cache moving code."}},{"before":"ab8ba167142326487a0a2278e3ad1e3ccd43e446","after":"c1b47503cd1ae19c2c7343abf20f49414ddc76d6","ref":"refs/heads/master","pushedAt":"2024-02-26T07:12:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Removed the old cache moving code and associated Suggests.\n\nThis is no longer necessary given that enough time has passed since the cache\nrelocation fiasco, I doubt anyone's still on the old cache locations.","shortMessageHtmlLink":"Removed the old cache moving code and associated Suggests."}},{"before":"8b1637a788ac22ee291173fe6b5bb841107031a0","after":null,"ref":"refs/heads/gypsum","pushedAt":"2024-02-26T07:09:11.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"}},{"before":"88575c83428da5199a03b5da316798777991e928","after":"ab8ba167142326487a0a2278e3ad1e3ccd43e446","ref":"refs/heads/master","pushedAt":"2024-02-26T07:09:09.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Switch to gypsum backend for saving and loading datasets. (#42)\n\nSimilarly, we switch to the alabaster framework to store the data, rather than\r\nRDS files. This should allow the files to be re-used in other languages.\r\n\r\nUsers can now grab SCEs directly from the gypsum backend with fetchDataset, and\r\nthey can perform listing and advanced searches directly on gypsum's SQLite\r\nfiles. This lays the groundwork for removing dependencies on ExperimentHub.\r\n\r\nAll of the little per-dataset functions now call fetchDataset to retrieve\r\ncontent, where it is back-compatible to do so. We plan to soft-deprecate all\r\nper-dataset functions to simplify maintenance; users should just call\r\nfetchDataset instead, and be responsible for any additional transformations.\r\n\r\nWe also provide functions for users to save and upload their own datasets.\r\nThis should simplify the process of making a contribution.","shortMessageHtmlLink":"Switch to gypsum backend for saving and loading datasets. (#42)"}},{"before":"bbbd8902dad83f3a30f46c78da0c816b599a3c53","after":"8b1637a788ac22ee291173fe6b5bb841107031a0","ref":"refs/heads/gypsum","pushedAt":"2024-02-26T07:02:37.000Z","pushType":"push","commitsCount":16,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Added a user's guide.","shortMessageHtmlLink":"Added a user's guide."}},{"before":"c02d5860d443ccf43c3d86f606f2c8b25a08bd40","after":"88575c83428da5199a03b5da316798777991e928","ref":"refs/heads/master","pushedAt":"2024-02-26T06:42:26.000Z","pushType":"push","commitsCount":13,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Fixed the NEWS file.","shortMessageHtmlLink":"Fixed the NEWS file."}},{"before":"98744d29f74614c0d36fc3fde70dedbfd75cf735","after":"bbbd8902dad83f3a30f46c78da0c816b599a3c53","ref":"refs/heads/gypsum","pushedAt":"2024-02-26T06:37:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Grind towards victory.","shortMessageHtmlLink":"Grind towards victory."}},{"before":"ea71299438bc2240386ba4e35b4b70fa7bf979d8","after":"98744d29f74614c0d36fc3fde70dedbfd75cf735","ref":"refs/heads/gypsum","pushedAt":"2024-02-26T06:08:20.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Added section in vignette about searching.","shortMessageHtmlLink":"Added section in vignette about searching."}},{"before":"714e94d95c5468b1aec1cabf52fd9cf531095417","after":"ea71299438bc2240386ba4e35b4b70fa7bf979d8","ref":"refs/heads/gypsum","pushedAt":"2024-02-26T02:55:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"More vignette details.","shortMessageHtmlLink":"More vignette details."}},{"before":"425f35772a3f88312c88e365800119ed8af5b3a8","after":"714e94d95c5468b1aec1cabf52fd9cf531095417","ref":"refs/heads/gypsum","pushedAt":"2024-02-26T02:50:36.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Updated the vignette.","shortMessageHtmlLink":"Updated the vignette."}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNi0yMFQxOTo1MDo1OC4wMDAwMDBazwAAAARq71mG","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNi0yMFQxOTo1MDo1OC4wMDAwMDBazwAAAARq71mG","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wMi0yNlQwMjo1MDozNi4wMDAwMDBazwAAAAQE6BkT"}},"title":"Activity · LTLA/scRNAseq"}