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build.sbt
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build.sbt
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import sbt.ExclusionRule
import sbtassembly.MergeStrategy
// *****************************************************************************
// Projects
// *****************************************************************************
lazy val `woken-validation` =
project
.in(file("."))
.enablePlugins(AutomateHeaderPlugin, GitVersioning, GitBranchPrompt)
.settings(settings)
.settings(
Seq(
mainClass in Runtime := Some("ch.chuv.lren.woken.validation.Main"),
libraryDependencies ++= Seq(
library.akkaActor,
library.akkaRemote,
library.akkaCluster,
library.akkaClusterTools,
library.akkaStream,
library.akkaSlf4j,
library.akkaHttp,
library.akkaHttpCors,
library.akkaHttpJson,
library.akkaManagementBase,
library.akkaManagementClusterHttp,
library.kamon,
library.kamonAkka,
library.kamonAkkaHttp,
library.kamonAkkaRemote,
library.kamonPrometheus,
library.kamonZipkin,
library.kamonSystemMetrics,
library.kamonSigar,
library.sprayJson,
library.catsCore,
library.hadrian,
library.sparkMllib,
library.sparkSql,
library.wokenMessages,
library.scalaCheck % Test,
library.scalaTest % Test,
library.scalaMock % Test,
library.akkaTestkit % Test
),
includeFilter in (Compile, unmanagedResources) := "*.xml" || "*.conf",
includeFilter in (Test, unmanagedResources) := "*.json",
// Use the customMergeStrategy in your settings
assemblyMergeStrategy in assembly := customMergeStrategy,
assemblyJarName in assembly := "woken-validation-all.jar"
)
)
// *****************************************************************************
// Library dependencies
// *****************************************************************************
lazy val library =
new {
object Version {
val scalaCheck = "1.14.0"
val scalaTest = "3.0.7"
val scalaMock = "4.2.0"
val akka = "2.5.22"
val akkaHttp = "10.1.8"
val akkaHttpCors = "0.4.0"
val akkaManagement = "1.0.0"
val kamon = "1.1.6"
val kamonAkka = "1.1.3"
val kamonAkkaRemote = "1.1.0"
val kamonAkkaHttp = "1.1.1"
val kamonPrometheus = "1.1.1"
val kamonReporter = "1.0.0"
val kamonSystemMetrics = "1.0.1"
val kamonSigar = "1.6.6-rev002"
val sprayJson = "1.3.5"
val cats = "1.6.0"
val hadrian = "0.8.5.1"
// TODO: Spark can be upgraded, but there is some work here
val spark = "2.0.2"
val wokenMessages = "3.0.14"
}
object ExclusionRules {
val excludeIvy = ExclusionRule(organization = "org.apache.ivy")
val excludeMail = ExclusionRule(organization = "javax.mail")
val excludeNettyIo = ExclusionRule(organization = "io.netty", name = "netty-all")
val excludeQQ = ExclusionRule(organization = "org.scalamacros")
val excludeParquet = ExclusionRule(organization = "org.apache.parquet")
val excludeNlp = ExclusionRule(organization = "org.scalanlp")
val excludeHadoop = ExclusionRule(organization = "org.apache.hadoop")
val excludeSlf4jLog4j12 = ExclusionRule(organization = "org.slf4j", name = "slf4j-log4j12")
val sparkExclusions = Seq(excludeIvy, excludeMail, excludeSlf4jLog4j12)
val excludeLogback = ExclusionRule(organization = "ch.qos.logback", name = "logback-classic")
val excludeJackson = ExclusionRule(organization = "com.fasterxml.jackson.core")
val excludeAkkaClusterSharding = ExclusionRule(organization = "com.typesafe.akka", name = "akka-cluster-sharding_2.11")
val excludeAkkaDistributedData = ExclusionRule(organization = "com.typesafe.akka", name = "akka-distributed-data")
}
val scalaCheck: ModuleID = "org.scalacheck" %% "scalacheck" % Version.scalaCheck
val scalaTest: ModuleID = "org.scalatest" %% "scalatest" % Version.scalaTest
val scalaMock:ModuleID = "org.scalamock" %% "scalamock" % Version.scalaMock
val akkaActor: ModuleID = "com.typesafe.akka" %% "akka-actor" % Version.akka
val akkaRemote: ModuleID = "com.typesafe.akka" %% "akka-remote" % Version.akka
val akkaCluster: ModuleID = "com.typesafe.akka" %% "akka-cluster" % Version.akka
val akkaClusterTools: ModuleID = "com.typesafe.akka" %% "akka-cluster-tools" % Version.akka
val akkaStream: ModuleID = "com.typesafe.akka" %% "akka-stream" % Version.akka
val akkaSlf4j: ModuleID = "com.typesafe.akka" %% "akka-slf4j" % Version.akka
val akkaTestkit: ModuleID = "com.typesafe.akka" %% "akka-testkit" % Version.akka
val akkaHttp: ModuleID = "com.typesafe.akka" %% "akka-http" % Version.akkaHttp
val akkaHttpJson: ModuleID = "com.typesafe.akka" %% "akka-http-spray-json" % Version.akkaHttp
val akkaHttpCors: ModuleID = "ch.megard" %% "akka-http-cors" % Version.akkaHttpCors
val akkaManagementBase: ModuleID = "com.lightbend.akka.management" %% "akka-management" % Version.akkaManagement
val akkaManagementClusterHttp: ModuleID = "com.lightbend.akka.management" %% "akka-management-cluster-http" % Version.akkaManagement excludeAll ExclusionRules.excludeAkkaClusterSharding
// Kamon
val kamon: ModuleID = "io.kamon" %% "kamon-core" % Version.kamon excludeAll ExclusionRules.excludeLogback
val kamonAkka: ModuleID = "io.kamon" %% "kamon-akka-2.5" % Version.kamonAkka excludeAll ExclusionRules.excludeLogback
val kamonAkkaRemote: ModuleID = "io.kamon" %% "kamon-akka-remote-2.5" % Version.kamonAkkaRemote excludeAll ExclusionRules.excludeLogback
val kamonAkkaHttp: ModuleID = "io.kamon" %% "kamon-akka-http-2.5" % Version.kamonAkkaHttp excludeAll ExclusionRules.excludeLogback
val kamonSystemMetrics: ModuleID = "io.kamon" %% "kamon-system-metrics" % Version.kamonSystemMetrics excludeAll ExclusionRules.excludeLogback
val kamonPrometheus: ModuleID = "io.kamon" %% "kamon-prometheus" % Version.kamonPrometheus excludeAll ExclusionRules.excludeLogback
val kamonZipkin: ModuleID = "io.kamon" %% "kamon-zipkin" % Version.kamonReporter excludeAll ExclusionRules.excludeLogback
val kamonSigar: ModuleID = "io.kamon" % "sigar-loader" % Version.kamonSigar
val sprayJson: ModuleID = "io.spray" %% "spray-json" % Version.sprayJson
val catsCore: ModuleID = "org.typelevel" %% "cats-core" % Version.cats
val hadrian: ModuleID = "com.opendatagroup" % "hadrian" % Version.hadrian
// spark 2.2.x
val sparkMllib: ModuleID = "org.apache.spark" %% "spark-mllib" % Version.spark excludeAll(ExclusionRules.sparkExclusions :_*)
val sparkSql: ModuleID = "org.apache.spark" %% "spark-sql" % Version.spark excludeAll(ExclusionRules.sparkExclusions :_*)
val wokenMessages: ModuleID = "ch.chuv.lren.woken" %% "woken-messages" % Version.wokenMessages excludeAll ExclusionRules.excludeJackson
}
resolvers += "HBPMedical Bintray Repo" at "https://dl.bintray.com/hbpmedical/maven/"
resolvers += "opendatagroup maven" at "http://repository.opendatagroup.com/maven"
// *****************************************************************************
// Settings
// *****************************************************************************
lazy val settings = commonSettings ++ gitSettings ++ scalafmtSettings
lazy val commonSettings =
Seq(
scalaVersion := "2.11.12",
organization in ThisBuild := "ch.chuv.lren.woken",
organizationName in ThisBuild := "LREN CHUV for Human Brain Project",
homepage in ThisBuild := Some(url(s"https://github.com/HBPMedical/${name.value}/#readme")),
licenses in ThisBuild := Seq("AGPL-3.0" ->
url(s"https://github.com/LREN-CHUV/${name.value}/blob/${version.value}/LICENSE")),
startYear in ThisBuild := Some(2017),
description in ThisBuild := "Cross validation module for Woken",
developers in ThisBuild := List(
Developer("ludovicc", "Ludovic Claude", "@ludovicc", url("https://github.com/ludovicc"))
),
scmInfo in ThisBuild := Some(ScmInfo(url(s"https://github.com/HBPMedical/${name.value}"), s"[email protected]:HBPMedical/${name.value}.git")),
scalacOptions ++= Seq(
"-unchecked",
"-deprecation",
"-Xlint",
"-Yno-adapted-args",
"-Ywarn-dead-code",
"-Ywarn-value-discard",
"-Ypartial-unification",
"-language:_",
"-target:jvm-1.8",
"-encoding",
"UTF-8"
),
javacOptions ++= Seq("-source", "1.8", "-target", "1.8", "-Xlint"),
unmanagedSourceDirectories.in(Compile) := Seq(scalaSource.in(Compile).value),
unmanagedSourceDirectories.in(Test) := Seq(scalaSource.in(Test).value),
wartremoverWarnings in (Compile, compile) ++= Warts.unsafe,
fork in run := true,
test in assembly := {},
fork in Test := true,
parallelExecution in Test := false
)
lazy val gitSettings =
Seq(
git.gitTagToVersionNumber := { tag: String =>
if (tag matches "[0-9]+\\..*") Some(tag)
else None
},
git.useGitDescribe := true
)
lazy val scalafmtSettings =
Seq(
scalafmtOnCompile := true,
scalafmtOnCompile.in(Sbt) := false,
scalafmtVersion := "1.5.1"
)
assemblyMergeStrategy in assembly := {
case PathList("io", "hydrosphere", xs @ _*) => MergeStrategy.first
case PathList("org","aopalliance", xs @ _*) => MergeStrategy.last
case PathList("javax", "inject", xs @ _*) => MergeStrategy.last
case PathList("javax", "servlet", xs @ _*) => MergeStrategy.last
case PathList("javax", "activation", xs @ _*) => MergeStrategy.last
case PathList("org", "apache", xs @ _*) => MergeStrategy.last
case PathList("org", "apache", "spark", "unused", xs @ _*) => MergeStrategy.first
case PathList("com", "google", xs @ _*) => MergeStrategy.last
case PathList("com", "esotericsoftware", xs @ _*) => MergeStrategy.last
case PathList("com", "codahale", xs @ _*) => MergeStrategy.last
case PathList("com", "yammer", xs @ _*) => MergeStrategy.last
case "about.html" => MergeStrategy.discard
case "overview.html" => MergeStrategy.discard
case "parquet.thrift" => MergeStrategy.last
case "META-INF/ECLIPSEF.RSA" => MergeStrategy.discard
case "META-INF/mailcap" => MergeStrategy.last
case "META-INF/mimetypes.default" => MergeStrategy.last
case "plugin.properties" => MergeStrategy.last
case "log4j.properties" => MergeStrategy.last
case x =>
val oldStrategy = (assemblyMergeStrategy in assembly).value
oldStrategy(x)
}
// Create a new MergeStrategy for aop.xml files
val aopMerge: MergeStrategy = new MergeStrategy {
val name = "aopMerge"
import scala.xml._
import scala.xml.dtd._
def apply(tempDir: File, path: String, files: Seq[File]): Either[String, Seq[(File, String)]] = {
val dt = DocType("aspectj", PublicID("-//AspectJ//DTD//EN", "http://www.eclipse.org/aspectj/dtd/aspectj.dtd"), Nil)
val file = MergeStrategy.createMergeTarget(tempDir, path)
val xmls: Seq[Elem] = files.map(XML.loadFile)
val aspectsChildren: Seq[Node] = xmls.flatMap(_ \\ "aspectj" \ "aspects" \ "_")
val weaverChildren: Seq[Node] = xmls.flatMap(_ \\ "aspectj" \ "weaver" \ "_")
val options: String = xmls.map(x => (x \\ "aspectj" \ "weaver" \ "@options").text).mkString(" ").trim
val weaverAttr = if (options.isEmpty) Null else new UnprefixedAttribute("options", options, Null)
val aspects = new Elem(null, "aspects", Null, TopScope, false, aspectsChildren: _*)
val weaver = new Elem(null, "weaver", weaverAttr, TopScope, false, weaverChildren: _*)
val aspectj = new Elem(null, "aspectj", Null, TopScope, false, aspects, weaver)
XML.save(file.toString, aspectj, "UTF-8", xmlDecl = false, dt)
IO.append(file, IO.Newline.getBytes(IO.defaultCharset))
Right(Seq(file -> path))
}
}
val customMergeStrategy: String => MergeStrategy = {
case PathList("io", "hydrosphere", xs @ _*) => MergeStrategy.first
case PathList("org","aopalliance", xs @ _*) => MergeStrategy.last
case PathList("javax", "inject", xs @ _*) => MergeStrategy.last
case PathList("javax", "servlet", xs @ _*) => MergeStrategy.last
case PathList("javax", "activation", xs @ _*) => MergeStrategy.last
case PathList("org", "apache", xs @ _*) => MergeStrategy.last
case PathList("org", "apache", "spark", "unused", xs @ _*) => MergeStrategy.first
case PathList("com", "google", xs @ _*) => MergeStrategy.last
case PathList("com", "esotericsoftware", xs @ _*) => MergeStrategy.last
case PathList("com", "codahale", xs @ _*) => MergeStrategy.last
case PathList("com", "yammer", xs @ _*) => MergeStrategy.last
case "about.html" => MergeStrategy.discard
case "overview.html" => MergeStrategy.discard
case "parquet.thrift" => MergeStrategy.last
case "META-INF/ECLIPSEF.RSA" => MergeStrategy.discard
case "META-INF/mailcap" => MergeStrategy.last
case "META-INF/mimetypes.default" => MergeStrategy.last
case "plugin.properties" => MergeStrategy.last
case "log4j.properties" => MergeStrategy.last
case PathList("META-INF", "aop.xml") => aopMerge
case s => MergeStrategy.defaultMergeStrategy(s)
}