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Methylation extractor stuck #644
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hmm, is it sill doing something? Can you run The only thing that looks a little dodgy to me is the high number of |
Hi Felix, No its stuck at the extraction stage. The log file is empty. |
If anything I would probably try to bring it down to point where you are happy that it is alll still working as expected... maybe |
Hi Felix, it worked with Thanks anyway! |
Hi,
I am running methylation_extractor and the process gets stuck. I have run this successfully in the past.
the output error last lines are:
I tried it a few times and its always stuck at this part while the job seems to continue running for days.
bismark_methylation_extractor --multicore 25 --no_overlap --gzip --bedGraph --comprehensive --no_header --buffer_size 100G -o bismark_result2 raw.deduplicated.bam > bismark_extract.log 2> bismark_extract.err &
Thanks,
Raz
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