Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Performance improvement: recipe_extremes_wind_3h.yml #2301

Open
bouweandela opened this issue Jan 16, 2024 · 0 comments
Open

Performance improvement: recipe_extremes_wind_3h.yml #2301

bouweandela opened this issue Jan 16, 2024 · 0 comments
Assignees

Comments

@bouweandela
Copy link
Member

bouweandela commented Jan 16, 2024

This issue keeps track of the performance improvements implemented for recipe_extremes_wind_3h.yml
reported in #1915 (comment) as part of the ESiWACE3 service project.

Settings

To run the recipe, the following settings are used:

~/.esmvaltool/config-user.yml

max_parallel_tasks: 1

~/.esmvaltool/dask.yml

cluster:
  type: dask_jobqueue.SLURMCluster
  queue: compute
  account: bd0854
  cores: 128
  memory: 256GiB
  processes: 32
  interface: ib0
  local_directory: /scratch/b/b381141/dask-tmp
  n_workers: 32
  walltime: '8:00:00'

Profiling

A smaller version of the recipe was used for profiling runs. It uses only the wind_fut variable.

Conda environment used for profiling: environment.yml.

The profiles attached below were created with py-spy using the command

py-spy record \
--idle \
--rate 10 \
--subprocesses \
--format speedscope \
esmvaltool run recipe_extremes_wind_3h.yml

and can be viewed with https://www.speedscope.app:

  1. Initial run profile_recipe_extremes_wind_3h.json (40 minutes)
  2. Faster Faster trivial equality checks for coordinates and arrays SciTools/iris#5691 profile
    ...
  3. main iris and ESMValCore branch on 2024-09-12 runs including Load esmvalcore.dataset.Dataset objects in parallel using Dask #2517 and Save all files in a task at the same time to avoid recomputing intermediate results #2522: single node (8 minutes), 2 nodes (5:20 minutes), 4 nodes (3:20 minutes)
@bouweandela bouweandela self-assigned this Jan 16, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
Status: In Progress
Development

No branches or pull requests

1 participant