diff --git a/dev_requirements.txt b/dev_requirements.txt index 58c4e660..ff9c303c 100644 --- a/dev_requirements.txt +++ b/dev_requirements.txt @@ -4,7 +4,7 @@ # # pip-compile --output-file=dev_requirements.txt # --e git+git://github.com/seung-lab/PyChunkedGraph.git@vminnie-125#egg=pychunkedgraph +-e git+git://github.com/seung-lab/PyChunkedGraph.git@v1.16.0#egg=pychunkedgraph # via -r requirements.in aiohttp==3.7.4.post0 # via gcsfs @@ -45,7 +45,6 @@ cachetools==4.2.4 # caveclient # google-auth # middle-auth-client - # pychunkedgraph caveclient==4.0.0 # via -r requirements.in celery==4.4.7 @@ -82,13 +81,14 @@ cloud-volume==6.0.0 # via # -r requirements.in # pychunkedgraph - # task-queue codecov==2.1.11 # via pychunkedgraph compressed-segmentation==2.0.1 # via cloud-volume compresso==2.3.1 # via cloud-volume +contact-points==0.0.7 + # via pychunkedgraph coverage==5.5 # via codecov crc32c==2.2 @@ -111,7 +111,9 @@ dill==0.3.3 # multiprocess # pathos dracopy==0.0.19 - # via cloud-volume + # via + # cloud-volume + # pychunkedgraph dynamicannotationdb==3.1.7 # via -r requirements.in emannotationschemas==3.5.4 @@ -173,12 +175,12 @@ gevent==20.6.2 # -r requirements.in # cloud-files # cloud-volume - # task-queue google-api-core[grpc]==1.29.0 # via # google-cloud-bigtable # google-cloud-core # google-cloud-datastore + # google-cloud-pubsub google-auth==1.30.1 # via # cloud-files @@ -201,6 +203,8 @@ google-cloud-core==1.6.0 # google-cloud-storage google-cloud-datastore==2.1.3 # via pychunkedgraph +google-cloud-pubsub==2.9.0 + # via messagingclient google-cloud-storage==1.38.0 # via # cloud-files @@ -218,10 +222,13 @@ googleapis-common-protos[grpc]==1.53.0 greenlet==1.1.0 # via gevent grpc-google-iam-v1==0.12.3 - # via google-cloud-bigtable -grpcio==1.38.0 + # via + # google-cloud-bigtable + # google-cloud-pubsub +grpcio==1.42.0 # via # google-api-core + # google-cloud-pubsub # googleapis-common-protos # grpc-google-iam-v1 # pychunkedgraph @@ -267,6 +274,7 @@ jsonschema==3.2.0 # dynamicannotationdb # emannotationschemas # flask-restx + # pychunkedgraph # python-jsonschema-objects kombu==4.6.11 # via celery @@ -274,6 +282,7 @@ libcst==0.3.19 # via # google-cloud-bigtable # google-cloud-datastore + # google-cloud-pubsub mako==1.1.5 # via alembic markdown==3.3.4 @@ -297,6 +306,8 @@ marshmallow-sqlalchemy==0.23.1 # via -r requirements.in matplotlib-inline==0.1.2 # via ipython +messagingclient==0.1.2 + # via pychunkedgraph middle-auth-client==3.9.0 # via # -r requirements.in @@ -326,15 +337,16 @@ numpy==1.21.4 # cloud-volume # compressed-segmentation # compresso + # contact-points # emannotationschemas # fastremap # fpzip + # messagingclient # multiwrapper # pandas # pyarrow # pychunkedgraph # simplejpeg - # task-queue # zmesh oauthlib==3.1.1 # via requests-oauthlib @@ -359,9 +371,6 @@ pathos==0.2.7 # via # cloud-files # cloud-volume - # task-queue -pbr==5.6.0 - # via task-queue pexpect==4.8.0 # via ipython pickleshare==0.7.5 @@ -382,6 +391,7 @@ proto-plus==1.18.1 # via # google-cloud-bigtable # google-cloud-datastore + # google-cloud-pubsub protobuf==3.17.2 # via # cloud-files @@ -414,7 +424,9 @@ pycparser==2.20 pygments==2.9.0 # via ipython pyopenssl==20.0.1 - # via urllib3 + # via + # pychunkedgraph + # urllib3 pyparsing==2.4.7 # via packaging pyrsistent==0.18.0 @@ -425,7 +437,6 @@ pytest==6.2.4 # via # compressed-segmentation # dracopy - # task-queue python-dateutil==2.8.1 # via # botocore @@ -445,9 +456,7 @@ pytz==2020.1 # google-api-core # pandas pyyaml==5.4.1 - # via - # libcst - # pychunkedgraph + # via libcst redis==4.0.0 # via # middle-auth-client @@ -466,7 +475,6 @@ requests==2.26.0 # middle-auth-client # pychunkedgraph # requests-oauthlib - # task-queue requests-oauthlib==1.3.0 # via google-auth-oauthlib rq==1.8.1 @@ -513,8 +521,6 @@ sqlalchemy==1.3.24 # flask-sqlalchemy # geoalchemy2 # marshmallow-sqlalchemy -task-queue==1.0.0 - # via pychunkedgraph tenacity==7.0.0 # via # cloud-files @@ -525,7 +531,6 @@ tqdm==4.61.0 # via # cloud-files # cloud-volume - # task-queue traitlets==5.0.5 # via # ipython @@ -544,7 +549,6 @@ urllib3[brotli,secure]==1.26.7 # botocore # cloud-files # cloud-volume - # pychunkedgraph # requests vine==1.3.0 # via diff --git a/requirements.in b/requirements.in index 2bb3e341..cac7f6da 100644 --- a/requirements.in +++ b/requirements.in @@ -26,4 +26,4 @@ flask_cors numpy>=1.20 dynamicannotationdb>=3.1.7 emannotationschemas>=3.5.4 --e git+git://github.com/seung-lab/PyChunkedGraph.git@vminnie-125#egg=pychunkedgraph \ No newline at end of file +-e git+git://github.com/seung-lab/PyChunkedGraph.git@v1.16.0#egg=pychunkedgraph \ No newline at end of file diff --git a/requirements.txt b/requirements.txt index add09f94..9af39cf0 100644 --- a/requirements.txt +++ b/requirements.txt @@ -4,7 +4,7 @@ # # pip-compile # --e git+git://github.com/seung-lab/PyChunkedGraph.git@vminnie-125#egg=pychunkedgraph +-e git+git://github.com/seung-lab/PyChunkedGraph.git@v1.16.0#egg=pychunkedgraph # via -r requirements.in aiohttp==3.7.4.post0 # via gcsfs @@ -45,7 +45,6 @@ cachetools==4.2.4 # caveclient # google-auth # middle-auth-client - # pychunkedgraph caveclient==4.0.0 # via -r requirements.in celery==4.4.7 @@ -82,13 +81,14 @@ cloud-volume==6.0.0 # via # -r requirements.in # pychunkedgraph - # task-queue codecov==2.1.11 # via pychunkedgraph compressed-segmentation==2.0.1 # via cloud-volume compresso==2.3.1 # via cloud-volume +contact-points==0.0.7 + # via pychunkedgraph coverage==5.5 # via codecov crc32c==2.2 @@ -111,7 +111,9 @@ dill==0.3.3 # multiprocess # pathos dracopy==0.0.19 - # via cloud-volume + # via + # cloud-volume + # pychunkedgraph dynamicannotationdb==3.1.7 # via -r requirements.in emannotationschemas==3.5.4 @@ -173,12 +175,12 @@ gevent==20.6.2 # -r requirements.in # cloud-files # cloud-volume - # task-queue google-api-core[grpc]==1.29.0 # via # google-cloud-bigtable # google-cloud-core # google-cloud-datastore + # google-cloud-pubsub google-auth==1.30.1 # via # cloud-files @@ -201,6 +203,8 @@ google-cloud-core==1.6.0 # google-cloud-storage google-cloud-datastore==2.1.3 # via pychunkedgraph +google-cloud-pubsub==2.9.0 + # via messagingclient google-cloud-storage==1.38.0 # via # cloud-files @@ -218,10 +222,13 @@ googleapis-common-protos[grpc]==1.53.0 greenlet==1.1.0 # via gevent grpc-google-iam-v1==0.12.3 - # via google-cloud-bigtable -grpcio==1.38.0 + # via + # google-cloud-bigtable + # google-cloud-pubsub +grpcio==1.42.0 # via # google-api-core + # google-cloud-pubsub # googleapis-common-protos # grpc-google-iam-v1 # pychunkedgraph @@ -267,6 +274,7 @@ jsonschema==3.2.0 # dynamicannotationdb # emannotationschemas # flask-restx + # pychunkedgraph # python-jsonschema-objects kombu==4.6.11 # via celery @@ -274,6 +282,7 @@ libcst==0.3.19 # via # google-cloud-bigtable # google-cloud-datastore + # google-cloud-pubsub mako==1.1.5 # via alembic markdown==3.3.4 @@ -297,6 +306,8 @@ marshmallow-sqlalchemy==0.23.1 # via -r requirements.in matplotlib-inline==0.1.2 # via ipython +messagingclient==0.1.2 + # via pychunkedgraph middle-auth-client==3.9.0 # via # -r requirements.in @@ -326,15 +337,16 @@ numpy==1.21.4 # cloud-volume # compressed-segmentation # compresso + # contact-points # emannotationschemas # fastremap # fpzip + # messagingclient # multiwrapper # pandas # pyarrow # pychunkedgraph # simplejpeg - # task-queue # zmesh oauthlib==3.1.1 # via requests-oauthlib @@ -359,9 +371,6 @@ pathos==0.2.7 # via # cloud-files # cloud-volume - # task-queue -pbr==5.6.0 - # via task-queue pexpect==4.8.0 # via ipython pickleshare==0.7.5 @@ -382,6 +391,7 @@ proto-plus==1.18.1 # via # google-cloud-bigtable # google-cloud-datastore + # google-cloud-pubsub protobuf==3.17.2 # via # cloud-files @@ -414,7 +424,9 @@ pycparser==2.20 pygments==2.9.0 # via ipython pyopenssl==20.0.1 - # via urllib3 + # via + # pychunkedgraph + # urllib3 pyparsing==2.4.7 # via packaging pyrsistent==0.18.0 @@ -425,7 +437,6 @@ pytest==6.2.4 # via # compressed-segmentation # dracopy - # task-queue python-dateutil==2.8.1 # via # botocore @@ -445,9 +456,7 @@ pytz==2020.1 # google-api-core # pandas pyyaml==5.4.1 - # via - # libcst - # pychunkedgraph + # via libcst redis==4.0.0 # via # middle-auth-client @@ -466,7 +475,6 @@ requests==2.26.0 # middle-auth-client # pychunkedgraph # requests-oauthlib - # task-queue requests-oauthlib==1.3.0 # via google-auth-oauthlib rq==1.8.1 @@ -513,8 +521,6 @@ sqlalchemy==1.3.24 # flask-sqlalchemy # geoalchemy2 # marshmallow-sqlalchemy -task-queue==1.0.0 - # via pychunkedgraph tenacity==7.0.0 # via # cloud-files @@ -525,7 +531,6 @@ tqdm==4.61.0 # via # cloud-files # cloud-volume - # task-queue traitlets==5.0.5 # via # ipython @@ -544,7 +549,6 @@ urllib3[brotli,secure]==1.26.7 # botocore # cloud-files # cloud-volume - # pychunkedgraph # requests vine==1.3.0 # via