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Number of bins prior to reclustering: 0 #173

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yazhinia opened this issue Aug 19, 2024 · 0 comments
Open

Number of bins prior to reclustering: 0 #173

yazhinia opened this issue Aug 19, 2024 · 0 comments

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@yazhinia
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Hi,
Semibin2 shows problem with producing bins SemiBin[86060] INFO Number of bins prior to reclustering: 0. Due to this, the following error occurs with Sequence file /semibin_tmp/tmpcyhmrovl/orfs.faa is empty or misformatted even though input is correct (sorted bam files and fasta contig file).

I also see problem with SemiBin[158473] INFO Did not detect GPU, using CPU. I run the script on gpu node but still it didn't detect and therefore very slow util it reaches the above error.

Any help in solving is much appreciated.

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